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Modelling the neural code in large populations of correlated neurons
Neurons respond selectively to stimuli, and thereby define a code that associates stimuli with population response patterns. Certain correlations within population responses (noise correlations) significantly impact the information content of the code, especially in large populations. Understanding...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8577837/ https://www.ncbi.nlm.nih.gov/pubmed/34608865 http://dx.doi.org/10.7554/eLife.64615 |
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author | Sokoloski, Sacha Aschner, Amir Coen-Cagli, Ruben |
author_facet | Sokoloski, Sacha Aschner, Amir Coen-Cagli, Ruben |
author_sort | Sokoloski, Sacha |
collection | PubMed |
description | Neurons respond selectively to stimuli, and thereby define a code that associates stimuli with population response patterns. Certain correlations within population responses (noise correlations) significantly impact the information content of the code, especially in large populations. Understanding the neural code thus necessitates response models that quantify the coding properties of modelled populations, while fitting large-scale neural recordings and capturing noise correlations. In this paper, we propose a class of response model based on mixture models and exponential families. We show how to fit our models with expectation-maximization, and that they capture diverse variability and covariability in recordings of macaque primary visual cortex. We also show how they facilitate accurate Bayesian decoding, provide a closed-form expression for the Fisher information, and are compatible with theories of probabilistic population coding. Our framework could allow researchers to quantitatively validate the predictions of neural coding theories against both large-scale neural recordings and cognitive performance. |
format | Online Article Text |
id | pubmed-8577837 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-85778372021-11-10 Modelling the neural code in large populations of correlated neurons Sokoloski, Sacha Aschner, Amir Coen-Cagli, Ruben eLife Neuroscience Neurons respond selectively to stimuli, and thereby define a code that associates stimuli with population response patterns. Certain correlations within population responses (noise correlations) significantly impact the information content of the code, especially in large populations. Understanding the neural code thus necessitates response models that quantify the coding properties of modelled populations, while fitting large-scale neural recordings and capturing noise correlations. In this paper, we propose a class of response model based on mixture models and exponential families. We show how to fit our models with expectation-maximization, and that they capture diverse variability and covariability in recordings of macaque primary visual cortex. We also show how they facilitate accurate Bayesian decoding, provide a closed-form expression for the Fisher information, and are compatible with theories of probabilistic population coding. Our framework could allow researchers to quantitatively validate the predictions of neural coding theories against both large-scale neural recordings and cognitive performance. eLife Sciences Publications, Ltd 2021-10-05 /pmc/articles/PMC8577837/ /pubmed/34608865 http://dx.doi.org/10.7554/eLife.64615 Text en © 2021, Sokoloski et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Neuroscience Sokoloski, Sacha Aschner, Amir Coen-Cagli, Ruben Modelling the neural code in large populations of correlated neurons |
title | Modelling the neural code in large populations of correlated neurons |
title_full | Modelling the neural code in large populations of correlated neurons |
title_fullStr | Modelling the neural code in large populations of correlated neurons |
title_full_unstemmed | Modelling the neural code in large populations of correlated neurons |
title_short | Modelling the neural code in large populations of correlated neurons |
title_sort | modelling the neural code in large populations of correlated neurons |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8577837/ https://www.ncbi.nlm.nih.gov/pubmed/34608865 http://dx.doi.org/10.7554/eLife.64615 |
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