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A geno-clinical decision model for the diagnosis of myelodysplastic syndromes

The differential diagnosis of myeloid malignancies is challenging and subject to interobserver variability. We used clinical and next-generation sequencing (NGS) data to develop a machine learning model for the diagnosis of myeloid malignancies independent of bone marrow biopsy data based on a 3-ins...

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Autores principales: Radakovich, Nathan, Meggendorfer, Manja, Malcovati, Luca, Hilton, C. Beau, Sekeres, Mikkael A., Shreve, Jacob, Rouphail, Yazan, Walter, Wencke, Hutter, Stephan, Galli, Anna, Pozzi, Sara, Elena, Chiara, Padron, Eric, Savona, Michael R., Gerds, Aaron T., Mukherjee, Sudipto, Nagata, Yasunobu, Komrokji, Rami S., Jha, Babal K., Haferlach, Claudia, Maciejewski, Jaroslaw P., Haferlach, Torsten, Nazha, Aziz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society of Hematology 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8579270/
https://www.ncbi.nlm.nih.gov/pubmed/34592765
http://dx.doi.org/10.1182/bloodadvances.2021004755
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author Radakovich, Nathan
Meggendorfer, Manja
Malcovati, Luca
Hilton, C. Beau
Sekeres, Mikkael A.
Shreve, Jacob
Rouphail, Yazan
Walter, Wencke
Hutter, Stephan
Galli, Anna
Pozzi, Sara
Elena, Chiara
Padron, Eric
Savona, Michael R.
Gerds, Aaron T.
Mukherjee, Sudipto
Nagata, Yasunobu
Komrokji, Rami S.
Jha, Babal K.
Haferlach, Claudia
Maciejewski, Jaroslaw P.
Haferlach, Torsten
Nazha, Aziz
author_facet Radakovich, Nathan
Meggendorfer, Manja
Malcovati, Luca
Hilton, C. Beau
Sekeres, Mikkael A.
Shreve, Jacob
Rouphail, Yazan
Walter, Wencke
Hutter, Stephan
Galli, Anna
Pozzi, Sara
Elena, Chiara
Padron, Eric
Savona, Michael R.
Gerds, Aaron T.
Mukherjee, Sudipto
Nagata, Yasunobu
Komrokji, Rami S.
Jha, Babal K.
Haferlach, Claudia
Maciejewski, Jaroslaw P.
Haferlach, Torsten
Nazha, Aziz
author_sort Radakovich, Nathan
collection PubMed
description The differential diagnosis of myeloid malignancies is challenging and subject to interobserver variability. We used clinical and next-generation sequencing (NGS) data to develop a machine learning model for the diagnosis of myeloid malignancies independent of bone marrow biopsy data based on a 3-institution, international cohort of patients. The model achieves high performance, with model interpretations indicating that it relies on factors similar to those used by clinicians. In addition, we describe associations between NGS findings and clinically important phenotypes and introduce the use of machine learning algorithms to elucidate clinicogenomic relationships.
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spelling pubmed-85792702021-11-10 A geno-clinical decision model for the diagnosis of myelodysplastic syndromes Radakovich, Nathan Meggendorfer, Manja Malcovati, Luca Hilton, C. Beau Sekeres, Mikkael A. Shreve, Jacob Rouphail, Yazan Walter, Wencke Hutter, Stephan Galli, Anna Pozzi, Sara Elena, Chiara Padron, Eric Savona, Michael R. Gerds, Aaron T. Mukherjee, Sudipto Nagata, Yasunobu Komrokji, Rami S. Jha, Babal K. Haferlach, Claudia Maciejewski, Jaroslaw P. Haferlach, Torsten Nazha, Aziz Blood Adv Myeloid Neoplasia The differential diagnosis of myeloid malignancies is challenging and subject to interobserver variability. We used clinical and next-generation sequencing (NGS) data to develop a machine learning model for the diagnosis of myeloid malignancies independent of bone marrow biopsy data based on a 3-institution, international cohort of patients. The model achieves high performance, with model interpretations indicating that it relies on factors similar to those used by clinicians. In addition, we describe associations between NGS findings and clinically important phenotypes and introduce the use of machine learning algorithms to elucidate clinicogenomic relationships. American Society of Hematology 2021-10-29 /pmc/articles/PMC8579270/ /pubmed/34592765 http://dx.doi.org/10.1182/bloodadvances.2021004755 Text en © 2021 by The American Society of Hematology. Licensed under Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0), permitting only noncommercial, nonderivative use with attribution. All other rights reserved.
spellingShingle Myeloid Neoplasia
Radakovich, Nathan
Meggendorfer, Manja
Malcovati, Luca
Hilton, C. Beau
Sekeres, Mikkael A.
Shreve, Jacob
Rouphail, Yazan
Walter, Wencke
Hutter, Stephan
Galli, Anna
Pozzi, Sara
Elena, Chiara
Padron, Eric
Savona, Michael R.
Gerds, Aaron T.
Mukherjee, Sudipto
Nagata, Yasunobu
Komrokji, Rami S.
Jha, Babal K.
Haferlach, Claudia
Maciejewski, Jaroslaw P.
Haferlach, Torsten
Nazha, Aziz
A geno-clinical decision model for the diagnosis of myelodysplastic syndromes
title A geno-clinical decision model for the diagnosis of myelodysplastic syndromes
title_full A geno-clinical decision model for the diagnosis of myelodysplastic syndromes
title_fullStr A geno-clinical decision model for the diagnosis of myelodysplastic syndromes
title_full_unstemmed A geno-clinical decision model for the diagnosis of myelodysplastic syndromes
title_short A geno-clinical decision model for the diagnosis of myelodysplastic syndromes
title_sort geno-clinical decision model for the diagnosis of myelodysplastic syndromes
topic Myeloid Neoplasia
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8579270/
https://www.ncbi.nlm.nih.gov/pubmed/34592765
http://dx.doi.org/10.1182/bloodadvances.2021004755
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