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DeepReac+: deep active learning for quantitative modeling of organic chemical reactions
Various computational methods have been developed for quantitative modeling of organic chemical reactions; however, the lack of universality as well as the requirement of large amounts of experimental data limit their broad applications. Here, we present DeepReac+, an efficient and universal computa...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8580052/ https://www.ncbi.nlm.nih.gov/pubmed/34880997 http://dx.doi.org/10.1039/d1sc02087k |
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author | Gong, Yukang Xue, Dongyu Chuai, Guohui Yu, Jing Liu, Qi |
author_facet | Gong, Yukang Xue, Dongyu Chuai, Guohui Yu, Jing Liu, Qi |
author_sort | Gong, Yukang |
collection | PubMed |
description | Various computational methods have been developed for quantitative modeling of organic chemical reactions; however, the lack of universality as well as the requirement of large amounts of experimental data limit their broad applications. Here, we present DeepReac+, an efficient and universal computational framework for prediction of chemical reaction outcomes and identification of optimal reaction conditions based on deep active learning. Under this framework, DeepReac is designed as a graph-neural-network-based model, which directly takes 2D molecular structures as inputs and automatically adapts to different prediction tasks. In addition, carefully-designed active learning strategies are incorporated to substantially reduce the number of necessary experiments for model training. We demonstrate the universality and high efficiency of DeepReac+ by achieving the state-of-the-art results with a minimum of labeled data on three diverse chemical reaction datasets in several scenarios. Collectively, DeepReac+ has great potential and utility in the development of AI-aided chemical synthesis. DeepReac+ is freely accessible at https://github.com/bm2-lab/DeepReac. |
format | Online Article Text |
id | pubmed-8580052 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-85800522021-12-07 DeepReac+: deep active learning for quantitative modeling of organic chemical reactions Gong, Yukang Xue, Dongyu Chuai, Guohui Yu, Jing Liu, Qi Chem Sci Chemistry Various computational methods have been developed for quantitative modeling of organic chemical reactions; however, the lack of universality as well as the requirement of large amounts of experimental data limit their broad applications. Here, we present DeepReac+, an efficient and universal computational framework for prediction of chemical reaction outcomes and identification of optimal reaction conditions based on deep active learning. Under this framework, DeepReac is designed as a graph-neural-network-based model, which directly takes 2D molecular structures as inputs and automatically adapts to different prediction tasks. In addition, carefully-designed active learning strategies are incorporated to substantially reduce the number of necessary experiments for model training. We demonstrate the universality and high efficiency of DeepReac+ by achieving the state-of-the-art results with a minimum of labeled data on three diverse chemical reaction datasets in several scenarios. Collectively, DeepReac+ has great potential and utility in the development of AI-aided chemical synthesis. DeepReac+ is freely accessible at https://github.com/bm2-lab/DeepReac. The Royal Society of Chemistry 2021-10-09 /pmc/articles/PMC8580052/ /pubmed/34880997 http://dx.doi.org/10.1039/d1sc02087k Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/ |
spellingShingle | Chemistry Gong, Yukang Xue, Dongyu Chuai, Guohui Yu, Jing Liu, Qi DeepReac+: deep active learning for quantitative modeling of organic chemical reactions |
title | DeepReac+: deep active learning for quantitative modeling of organic chemical reactions |
title_full | DeepReac+: deep active learning for quantitative modeling of organic chemical reactions |
title_fullStr | DeepReac+: deep active learning for quantitative modeling of organic chemical reactions |
title_full_unstemmed | DeepReac+: deep active learning for quantitative modeling of organic chemical reactions |
title_short | DeepReac+: deep active learning for quantitative modeling of organic chemical reactions |
title_sort | deepreac+: deep active learning for quantitative modeling of organic chemical reactions |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8580052/ https://www.ncbi.nlm.nih.gov/pubmed/34880997 http://dx.doi.org/10.1039/d1sc02087k |
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