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A Bayesian approach to comparing common models of life-course epidemiology

BACKGROUND: Life-course epidemiology studies people’s health over long periods, treating repeated measures of their experiences (usually risk factors) as predictors or causes of subsequent morbidity and mortality. Three hypotheses or models often guide the analyst in assessing these sequential risks...

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Autores principales: Chumbley, Justin, Xu, Wenjia, Potente, Cecilia, Harris, Kathleen M, Shanahan, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8580273/
https://www.ncbi.nlm.nih.gov/pubmed/33969390
http://dx.doi.org/10.1093/ije/dyab073
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author Chumbley, Justin
Xu, Wenjia
Potente, Cecilia
Harris, Kathleen M
Shanahan, Michael
author_facet Chumbley, Justin
Xu, Wenjia
Potente, Cecilia
Harris, Kathleen M
Shanahan, Michael
author_sort Chumbley, Justin
collection PubMed
description BACKGROUND: Life-course epidemiology studies people’s health over long periods, treating repeated measures of their experiences (usually risk factors) as predictors or causes of subsequent morbidity and mortality. Three hypotheses or models often guide the analyst in assessing these sequential risks: the accumulation model (all measurement occasions are equally important for predicting the outcome), the critical period model (only one occasion is important) and the sensitive periods model (a catch-all model for any other pattern of temporal dependence). METHODS: We propose a Bayesian omnibus test of these three composite models, as well as post hoc decompositions that identify their best respective sub-models. We test the approach via simulations, before presenting an empirical example that relates five sequential measurements of body weight to an RNAseq measure of colorectal-cancer disposition. RESULTS: The approach correctly identifies the life-course model under which the data were simulated. Our empirical cohort study indicated with >90% probability that colorectal-cancer disposition reflected a sensitive process, with current weight being most important but prior body weight also playing a role. CONCLUSIONS: The Bayesian methods we present allow precise inferences about the probability of life-course models given the data and are applicable in realistic scenarios involving causal analysis and missing data.
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spelling pubmed-85802732021-11-12 A Bayesian approach to comparing common models of life-course epidemiology Chumbley, Justin Xu, Wenjia Potente, Cecilia Harris, Kathleen M Shanahan, Michael Int J Epidemiol Methods BACKGROUND: Life-course epidemiology studies people’s health over long periods, treating repeated measures of their experiences (usually risk factors) as predictors or causes of subsequent morbidity and mortality. Three hypotheses or models often guide the analyst in assessing these sequential risks: the accumulation model (all measurement occasions are equally important for predicting the outcome), the critical period model (only one occasion is important) and the sensitive periods model (a catch-all model for any other pattern of temporal dependence). METHODS: We propose a Bayesian omnibus test of these three composite models, as well as post hoc decompositions that identify their best respective sub-models. We test the approach via simulations, before presenting an empirical example that relates five sequential measurements of body weight to an RNAseq measure of colorectal-cancer disposition. RESULTS: The approach correctly identifies the life-course model under which the data were simulated. Our empirical cohort study indicated with >90% probability that colorectal-cancer disposition reflected a sensitive process, with current weight being most important but prior body weight also playing a role. CONCLUSIONS: The Bayesian methods we present allow precise inferences about the probability of life-course models given the data and are applicable in realistic scenarios involving causal analysis and missing data. Oxford University Press 2021-05-10 /pmc/articles/PMC8580273/ /pubmed/33969390 http://dx.doi.org/10.1093/ije/dyab073 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of the International Epidemiological Association. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Methods
Chumbley, Justin
Xu, Wenjia
Potente, Cecilia
Harris, Kathleen M
Shanahan, Michael
A Bayesian approach to comparing common models of life-course epidemiology
title A Bayesian approach to comparing common models of life-course epidemiology
title_full A Bayesian approach to comparing common models of life-course epidemiology
title_fullStr A Bayesian approach to comparing common models of life-course epidemiology
title_full_unstemmed A Bayesian approach to comparing common models of life-course epidemiology
title_short A Bayesian approach to comparing common models of life-course epidemiology
title_sort bayesian approach to comparing common models of life-course epidemiology
topic Methods
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8580273/
https://www.ncbi.nlm.nih.gov/pubmed/33969390
http://dx.doi.org/10.1093/ije/dyab073
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