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Grassmann Extrapolation of Density Matrices for Born–Oppenheimer Molecular Dynamics
[Image: see text] Born–Oppenheimer molecular dynamics (BOMD) is a powerful but expensive technique. The main bottleneck in a density functional theory BOMD calculation is the solution to the Kohn–Sham (KS) equations that requires an iterative procedure that starts from a guess for the density matrix...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8582259/ https://www.ncbi.nlm.nih.gov/pubmed/34623810 http://dx.doi.org/10.1021/acs.jctc.1c00751 |
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author | Polack, Étienne Dusson, Geneviève Stamm, Benjamin Lipparini, Filippo |
author_facet | Polack, Étienne Dusson, Geneviève Stamm, Benjamin Lipparini, Filippo |
author_sort | Polack, Étienne |
collection | PubMed |
description | [Image: see text] Born–Oppenheimer molecular dynamics (BOMD) is a powerful but expensive technique. The main bottleneck in a density functional theory BOMD calculation is the solution to the Kohn–Sham (KS) equations that requires an iterative procedure that starts from a guess for the density matrix. Converged densities from previous points in the trajectory can be used to extrapolate a new guess; however, the nonlinear constraint that an idempotent density needs to satisfy makes the direct use of standard linear extrapolation techniques not possible. In this contribution, we introduce a locally bijective map between the manifold where the density is defined and its tangent space so that linear extrapolation can be performed in a vector space while, at the same time, retaining the correct physical properties of the extrapolated density using molecular descriptors. We apply the method to real-life, multiscale, polarizable QM/MM BOMD simulations, showing that sizeable performance gains can be achieved, especially when a tighter convergence to the KS equations is required. |
format | Online Article Text |
id | pubmed-8582259 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-85822592021-11-12 Grassmann Extrapolation of Density Matrices for Born–Oppenheimer Molecular Dynamics Polack, Étienne Dusson, Geneviève Stamm, Benjamin Lipparini, Filippo J Chem Theory Comput [Image: see text] Born–Oppenheimer molecular dynamics (BOMD) is a powerful but expensive technique. The main bottleneck in a density functional theory BOMD calculation is the solution to the Kohn–Sham (KS) equations that requires an iterative procedure that starts from a guess for the density matrix. Converged densities from previous points in the trajectory can be used to extrapolate a new guess; however, the nonlinear constraint that an idempotent density needs to satisfy makes the direct use of standard linear extrapolation techniques not possible. In this contribution, we introduce a locally bijective map between the manifold where the density is defined and its tangent space so that linear extrapolation can be performed in a vector space while, at the same time, retaining the correct physical properties of the extrapolated density using molecular descriptors. We apply the method to real-life, multiscale, polarizable QM/MM BOMD simulations, showing that sizeable performance gains can be achieved, especially when a tighter convergence to the KS equations is required. American Chemical Society 2021-10-08 2021-11-09 /pmc/articles/PMC8582259/ /pubmed/34623810 http://dx.doi.org/10.1021/acs.jctc.1c00751 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Polack, Étienne Dusson, Geneviève Stamm, Benjamin Lipparini, Filippo Grassmann Extrapolation of Density Matrices for Born–Oppenheimer Molecular Dynamics |
title | Grassmann Extrapolation of Density Matrices for Born–Oppenheimer
Molecular Dynamics |
title_full | Grassmann Extrapolation of Density Matrices for Born–Oppenheimer
Molecular Dynamics |
title_fullStr | Grassmann Extrapolation of Density Matrices for Born–Oppenheimer
Molecular Dynamics |
title_full_unstemmed | Grassmann Extrapolation of Density Matrices for Born–Oppenheimer
Molecular Dynamics |
title_short | Grassmann Extrapolation of Density Matrices for Born–Oppenheimer
Molecular Dynamics |
title_sort | grassmann extrapolation of density matrices for born–oppenheimer
molecular dynamics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8582259/ https://www.ncbi.nlm.nih.gov/pubmed/34623810 http://dx.doi.org/10.1021/acs.jctc.1c00751 |
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