Cargando…

Incorporating Robustness to Imaging Physics into Radiomic Feature Selection for Breast Cancer Risk Estimation

SIMPLE SUMMARY: Mammographic density estimates can be combined with radiomic texture features to offer an even better assessment of breast cancer risk. However, some feature variations will be due to true parenchymal differences between women, but others will be due to imaging physics effects (contr...

Descripción completa

Detalles Bibliográficos
Autores principales: Acciavatti, Raymond J., Cohen, Eric A., Maghsoudi, Omid Haji, Gastounioti, Aimilia, Pantalone, Lauren, Hsieh, Meng-Kang, Conant, Emily F., Scott, Christopher G., Winham, Stacey J., Kerlikowske, Karla, Vachon, Celine, Maidment, Andrew D. A., Kontos, Despina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8582675/
https://www.ncbi.nlm.nih.gov/pubmed/34771660
http://dx.doi.org/10.3390/cancers13215497
_version_ 1784597038461091840
author Acciavatti, Raymond J.
Cohen, Eric A.
Maghsoudi, Omid Haji
Gastounioti, Aimilia
Pantalone, Lauren
Hsieh, Meng-Kang
Conant, Emily F.
Scott, Christopher G.
Winham, Stacey J.
Kerlikowske, Karla
Vachon, Celine
Maidment, Andrew D. A.
Kontos, Despina
author_facet Acciavatti, Raymond J.
Cohen, Eric A.
Maghsoudi, Omid Haji
Gastounioti, Aimilia
Pantalone, Lauren
Hsieh, Meng-Kang
Conant, Emily F.
Scott, Christopher G.
Winham, Stacey J.
Kerlikowske, Karla
Vachon, Celine
Maidment, Andrew D. A.
Kontos, Despina
author_sort Acciavatti, Raymond J.
collection PubMed
description SIMPLE SUMMARY: Mammographic density estimates can be combined with radiomic texture features to offer an even better assessment of breast cancer risk. However, some feature variations will be due to true parenchymal differences between women, but others will be due to imaging physics effects (contrast, noise, and image sharpness); features robust to imaging physics effects should better model risk. To investigate this, we imaged an anthropomorphic phantom at various x-ray technique settings, allowing us to directly measure the effects of imaging physics on feature values. We compared these variations, for each feature, with the inter-woman variation in a screening population (552 cancer-free women) and the intra-woman variation between each woman’s left and right breasts, to assess which features were relatively robust to physics settings. We then tested more- versus less-robust features in modeling cancer risk on an independent case-control data set, and demonstrated that more-robust features were indeed better at risk prediction. ABSTRACT: Digital mammography has seen an explosion in the number of radiomic features used for risk-assessment modeling. However, having more features is not necessarily beneficial, as some features may be overly sensitive to imaging physics (contrast, noise, and image sharpness). To measure the effects of imaging physics, we analyzed the feature variation across imaging acquisition settings (kV, mAs) using an anthropomorphic phantom. We also analyzed the intra-woman variation (IWV), a measure of how much a feature varies between breasts with similar parenchymal patterns—a woman’s left and right breasts. From 341 features, we identified “robust” features that minimized the effects of imaging physics and IWV. We also investigated whether robust features offered better case-control classification in an independent data set of 575 images, all with an overall BI-RADS(®) assessment of 1 (negative) or 2 (benign); 115 images (cases) were of women who developed cancer at least one year after that screening image, matched to 460 controls. We modeled cancer occurrence via logistic regression, using cross-validated area under the receiver-operating-characteristic curve (AUC) to measure model performance. Models using features from the most-robust quartile of features yielded an AUC = 0.59, versus 0.54 for the least-robust, with p < 0.005 for the difference among the quartiles.
format Online
Article
Text
id pubmed-8582675
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-85826752021-11-12 Incorporating Robustness to Imaging Physics into Radiomic Feature Selection for Breast Cancer Risk Estimation Acciavatti, Raymond J. Cohen, Eric A. Maghsoudi, Omid Haji Gastounioti, Aimilia Pantalone, Lauren Hsieh, Meng-Kang Conant, Emily F. Scott, Christopher G. Winham, Stacey J. Kerlikowske, Karla Vachon, Celine Maidment, Andrew D. A. Kontos, Despina Cancers (Basel) Article SIMPLE SUMMARY: Mammographic density estimates can be combined with radiomic texture features to offer an even better assessment of breast cancer risk. However, some feature variations will be due to true parenchymal differences between women, but others will be due to imaging physics effects (contrast, noise, and image sharpness); features robust to imaging physics effects should better model risk. To investigate this, we imaged an anthropomorphic phantom at various x-ray technique settings, allowing us to directly measure the effects of imaging physics on feature values. We compared these variations, for each feature, with the inter-woman variation in a screening population (552 cancer-free women) and the intra-woman variation between each woman’s left and right breasts, to assess which features were relatively robust to physics settings. We then tested more- versus less-robust features in modeling cancer risk on an independent case-control data set, and demonstrated that more-robust features were indeed better at risk prediction. ABSTRACT: Digital mammography has seen an explosion in the number of radiomic features used for risk-assessment modeling. However, having more features is not necessarily beneficial, as some features may be overly sensitive to imaging physics (contrast, noise, and image sharpness). To measure the effects of imaging physics, we analyzed the feature variation across imaging acquisition settings (kV, mAs) using an anthropomorphic phantom. We also analyzed the intra-woman variation (IWV), a measure of how much a feature varies between breasts with similar parenchymal patterns—a woman’s left and right breasts. From 341 features, we identified “robust” features that minimized the effects of imaging physics and IWV. We also investigated whether robust features offered better case-control classification in an independent data set of 575 images, all with an overall BI-RADS(®) assessment of 1 (negative) or 2 (benign); 115 images (cases) were of women who developed cancer at least one year after that screening image, matched to 460 controls. We modeled cancer occurrence via logistic regression, using cross-validated area under the receiver-operating-characteristic curve (AUC) to measure model performance. Models using features from the most-robust quartile of features yielded an AUC = 0.59, versus 0.54 for the least-robust, with p < 0.005 for the difference among the quartiles. MDPI 2021-11-01 /pmc/articles/PMC8582675/ /pubmed/34771660 http://dx.doi.org/10.3390/cancers13215497 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Acciavatti, Raymond J.
Cohen, Eric A.
Maghsoudi, Omid Haji
Gastounioti, Aimilia
Pantalone, Lauren
Hsieh, Meng-Kang
Conant, Emily F.
Scott, Christopher G.
Winham, Stacey J.
Kerlikowske, Karla
Vachon, Celine
Maidment, Andrew D. A.
Kontos, Despina
Incorporating Robustness to Imaging Physics into Radiomic Feature Selection for Breast Cancer Risk Estimation
title Incorporating Robustness to Imaging Physics into Radiomic Feature Selection for Breast Cancer Risk Estimation
title_full Incorporating Robustness to Imaging Physics into Radiomic Feature Selection for Breast Cancer Risk Estimation
title_fullStr Incorporating Robustness to Imaging Physics into Radiomic Feature Selection for Breast Cancer Risk Estimation
title_full_unstemmed Incorporating Robustness to Imaging Physics into Radiomic Feature Selection for Breast Cancer Risk Estimation
title_short Incorporating Robustness to Imaging Physics into Radiomic Feature Selection for Breast Cancer Risk Estimation
title_sort incorporating robustness to imaging physics into radiomic feature selection for breast cancer risk estimation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8582675/
https://www.ncbi.nlm.nih.gov/pubmed/34771660
http://dx.doi.org/10.3390/cancers13215497
work_keys_str_mv AT acciavattiraymondj incorporatingrobustnesstoimagingphysicsintoradiomicfeatureselectionforbreastcancerriskestimation
AT cohenerica incorporatingrobustnesstoimagingphysicsintoradiomicfeatureselectionforbreastcancerriskestimation
AT maghsoudiomidhaji incorporatingrobustnesstoimagingphysicsintoradiomicfeatureselectionforbreastcancerriskestimation
AT gastouniotiaimilia incorporatingrobustnesstoimagingphysicsintoradiomicfeatureselectionforbreastcancerriskestimation
AT pantalonelauren incorporatingrobustnesstoimagingphysicsintoradiomicfeatureselectionforbreastcancerriskestimation
AT hsiehmengkang incorporatingrobustnesstoimagingphysicsintoradiomicfeatureselectionforbreastcancerriskestimation
AT conantemilyf incorporatingrobustnesstoimagingphysicsintoradiomicfeatureselectionforbreastcancerriskestimation
AT scottchristopherg incorporatingrobustnesstoimagingphysicsintoradiomicfeatureselectionforbreastcancerriskestimation
AT winhamstaceyj incorporatingrobustnesstoimagingphysicsintoradiomicfeatureselectionforbreastcancerriskestimation
AT kerlikowskekarla incorporatingrobustnesstoimagingphysicsintoradiomicfeatureselectionforbreastcancerriskestimation
AT vachonceline incorporatingrobustnesstoimagingphysicsintoradiomicfeatureselectionforbreastcancerriskestimation
AT maidmentandrewda incorporatingrobustnesstoimagingphysicsintoradiomicfeatureselectionforbreastcancerriskestimation
AT kontosdespina incorporatingrobustnesstoimagingphysicsintoradiomicfeatureselectionforbreastcancerriskestimation