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Metabarcoding Analysis of Harmful Algal Bloom Species in the Western Pacific Seamount Regions
The Western Pacific is the most oligotrophic sea on Earth, with numerous seamounts. However, the plankton diversity and biogeography of the Western Pacific in general and the seamount regions in particular remains largely unexplored. In this project, we quantitatively analyzed the composition and di...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8582749/ https://www.ncbi.nlm.nih.gov/pubmed/34769984 http://dx.doi.org/10.3390/ijerph182111470 |
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author | Xu, Qing Wang, Chunzhi Xu, Kuidong Chen, Nansheng |
author_facet | Xu, Qing Wang, Chunzhi Xu, Kuidong Chen, Nansheng |
author_sort | Xu, Qing |
collection | PubMed |
description | The Western Pacific is the most oligotrophic sea on Earth, with numerous seamounts. However, the plankton diversity and biogeography of the Western Pacific in general and the seamount regions in particular remains largely unexplored. In this project, we quantitatively analyzed the composition and distribution patterns of plankton species in the Western Pacific seamount regions by applying metabarcoding analysis. We identified 4601 amplicon sequence variants (ASVs) representing 34 classes in seven protist phyla/divisions in the Western Pacific seamount regions, among which Dinoflagellata was by far the most dominant division. Among the 336 annotated phytoplankton species (including species in Dinoflagellata), we identified 36 harmful algal bloom (HAB) species, many of which displayed unique spatial distribution patterns in the Western Pacific seamount regions. This study was the first attempt in applying ASV-based metabarcoding analysis in studying phytoplankton and HAB species in the Western Pacific seamount regions, which may facilitate further research on the potential correlation between HABs in the Western Pacific seamount regions and coastal regions. |
format | Online Article Text |
id | pubmed-8582749 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-85827492021-11-12 Metabarcoding Analysis of Harmful Algal Bloom Species in the Western Pacific Seamount Regions Xu, Qing Wang, Chunzhi Xu, Kuidong Chen, Nansheng Int J Environ Res Public Health Article The Western Pacific is the most oligotrophic sea on Earth, with numerous seamounts. However, the plankton diversity and biogeography of the Western Pacific in general and the seamount regions in particular remains largely unexplored. In this project, we quantitatively analyzed the composition and distribution patterns of plankton species in the Western Pacific seamount regions by applying metabarcoding analysis. We identified 4601 amplicon sequence variants (ASVs) representing 34 classes in seven protist phyla/divisions in the Western Pacific seamount regions, among which Dinoflagellata was by far the most dominant division. Among the 336 annotated phytoplankton species (including species in Dinoflagellata), we identified 36 harmful algal bloom (HAB) species, many of which displayed unique spatial distribution patterns in the Western Pacific seamount regions. This study was the first attempt in applying ASV-based metabarcoding analysis in studying phytoplankton and HAB species in the Western Pacific seamount regions, which may facilitate further research on the potential correlation between HABs in the Western Pacific seamount regions and coastal regions. MDPI 2021-10-31 /pmc/articles/PMC8582749/ /pubmed/34769984 http://dx.doi.org/10.3390/ijerph182111470 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Xu, Qing Wang, Chunzhi Xu, Kuidong Chen, Nansheng Metabarcoding Analysis of Harmful Algal Bloom Species in the Western Pacific Seamount Regions |
title | Metabarcoding Analysis of Harmful Algal Bloom Species in the Western Pacific Seamount Regions |
title_full | Metabarcoding Analysis of Harmful Algal Bloom Species in the Western Pacific Seamount Regions |
title_fullStr | Metabarcoding Analysis of Harmful Algal Bloom Species in the Western Pacific Seamount Regions |
title_full_unstemmed | Metabarcoding Analysis of Harmful Algal Bloom Species in the Western Pacific Seamount Regions |
title_short | Metabarcoding Analysis of Harmful Algal Bloom Species in the Western Pacific Seamount Regions |
title_sort | metabarcoding analysis of harmful algal bloom species in the western pacific seamount regions |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8582749/ https://www.ncbi.nlm.nih.gov/pubmed/34769984 http://dx.doi.org/10.3390/ijerph182111470 |
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