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Modifier Role of Common RET Variants in Sporadic Medullary Thyroid Carcinoma

Background: Although the disease-causing effect of pathogenic variants in the gene RET has been unambiguously identified, there is a lack of consensus regarding the possible impact of common variants in this gene. Our study aimed to test whether variants in exons 10, 11, and 13–16 that are commonly...

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Autores principales: Skalniak, Anna, Trofimiuk-Müldner, Małgorzata, Przybylik-Mazurek, Elwira, Hubalewska-Dydejczyk, Alicja
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8583971/
https://www.ncbi.nlm.nih.gov/pubmed/34769224
http://dx.doi.org/10.3390/ijms222111794
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author Skalniak, Anna
Trofimiuk-Müldner, Małgorzata
Przybylik-Mazurek, Elwira
Hubalewska-Dydejczyk, Alicja
author_facet Skalniak, Anna
Trofimiuk-Müldner, Małgorzata
Przybylik-Mazurek, Elwira
Hubalewska-Dydejczyk, Alicja
author_sort Skalniak, Anna
collection PubMed
description Background: Although the disease-causing effect of pathogenic variants in the gene RET has been unambiguously identified, there is a lack of consensus regarding the possible impact of common variants in this gene. Our study aimed to test whether variants in exons 10, 11, and 13–16 that are commonly detected during routine diagnostic testing might have any modifying effect on MTC. Methods: In sporadic MTC patients with no pathogenic variants but with or without common variants in RET, the following variants were evaluated: rs1799939 (p.G691S), rs1800861 (p.L769=), rs1800862 (p.S836=), rs2472737 in intron 14, and rs1800863 (p.S904=). Results: After Bonferroni correction, none of the variants were statistically significantly associated with disease outcome when analysed independently. The MTC group was divided into three genetically different clusters by unsupervised k-means clustering. Those clusters differed significantly in the age at diagnosis. A trend towards the association of given clusters with metabolic disorders and with remission state was identified. Conclusions: Although common variants in RET are not responsible for the risk of MTC, their analysis might turn out useful in the prediction of a patient’s clinical outcome. Importantly, this analysis would come with no additional cost in laboratories with a diagnostic procedure based on exon sequencing.
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spelling pubmed-85839712021-11-12 Modifier Role of Common RET Variants in Sporadic Medullary Thyroid Carcinoma Skalniak, Anna Trofimiuk-Müldner, Małgorzata Przybylik-Mazurek, Elwira Hubalewska-Dydejczyk, Alicja Int J Mol Sci Article Background: Although the disease-causing effect of pathogenic variants in the gene RET has been unambiguously identified, there is a lack of consensus regarding the possible impact of common variants in this gene. Our study aimed to test whether variants in exons 10, 11, and 13–16 that are commonly detected during routine diagnostic testing might have any modifying effect on MTC. Methods: In sporadic MTC patients with no pathogenic variants but with or without common variants in RET, the following variants were evaluated: rs1799939 (p.G691S), rs1800861 (p.L769=), rs1800862 (p.S836=), rs2472737 in intron 14, and rs1800863 (p.S904=). Results: After Bonferroni correction, none of the variants were statistically significantly associated with disease outcome when analysed independently. The MTC group was divided into three genetically different clusters by unsupervised k-means clustering. Those clusters differed significantly in the age at diagnosis. A trend towards the association of given clusters with metabolic disorders and with remission state was identified. Conclusions: Although common variants in RET are not responsible for the risk of MTC, their analysis might turn out useful in the prediction of a patient’s clinical outcome. Importantly, this analysis would come with no additional cost in laboratories with a diagnostic procedure based on exon sequencing. MDPI 2021-10-30 /pmc/articles/PMC8583971/ /pubmed/34769224 http://dx.doi.org/10.3390/ijms222111794 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Skalniak, Anna
Trofimiuk-Müldner, Małgorzata
Przybylik-Mazurek, Elwira
Hubalewska-Dydejczyk, Alicja
Modifier Role of Common RET Variants in Sporadic Medullary Thyroid Carcinoma
title Modifier Role of Common RET Variants in Sporadic Medullary Thyroid Carcinoma
title_full Modifier Role of Common RET Variants in Sporadic Medullary Thyroid Carcinoma
title_fullStr Modifier Role of Common RET Variants in Sporadic Medullary Thyroid Carcinoma
title_full_unstemmed Modifier Role of Common RET Variants in Sporadic Medullary Thyroid Carcinoma
title_short Modifier Role of Common RET Variants in Sporadic Medullary Thyroid Carcinoma
title_sort modifier role of common ret variants in sporadic medullary thyroid carcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8583971/
https://www.ncbi.nlm.nih.gov/pubmed/34769224
http://dx.doi.org/10.3390/ijms222111794
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