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The Evolutionary History of Vertebrate Adhesion GPCRs and Its Implication on Their Classification

Adhesion G protein-coupled receptors (aGPCRs) form a structurally separate class of GPCRs with an unresolved evolutionary history and classification. Based on phylogenetic relations of human aGPCRs, nine families (A–G, L, V) were distinguished. Taking advantage of available genome data, we determine...

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Autores principales: Wittlake, Aline, Prömel, Simone, Schöneberg, Torsten
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8584163/
https://www.ncbi.nlm.nih.gov/pubmed/34769233
http://dx.doi.org/10.3390/ijms222111803
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author Wittlake, Aline
Prömel, Simone
Schöneberg, Torsten
author_facet Wittlake, Aline
Prömel, Simone
Schöneberg, Torsten
author_sort Wittlake, Aline
collection PubMed
description Adhesion G protein-coupled receptors (aGPCRs) form a structurally separate class of GPCRs with an unresolved evolutionary history and classification. Based on phylogenetic relations of human aGPCRs, nine families (A–G, L, V) were distinguished. Taking advantage of available genome data, we determined the aGPCR repertoires in all vertebrate classes. Although most aGPCR families show a high numerical stability in vertebrate genomes, the full repertoire of family E, F, and G members appeared only after the fish–tetrapod split. We did not find any evidence for new aGPCR families in vertebrates which are not present in the human genome. Based on ortholog sequence alignments, selection analysis clearly indicated two types of tetrapod aGPCRs: (i) aGPCR under strong purifying selection in tetrapod evolution (families A, B, D, L, V); and (ii) aGPCR with signatures of positive selection in some tetrapod linages (families C, E, G, F). The alignments of aGPCRs also allowed for a revised definition of reference positions within the seven-transmembrane-helix domain (relative position numbering scheme). Based on our phylogenetic cluster analysis, we suggest a revised nomenclature of aGPCRs including their transcript variants. Herein, the former families E and L are combined to one family (L) and GPR128/ADGRG7 forms a separate family (E). Furthermore, our analyses provide valuable information about the (patho)physiological relevance of individual aGPCR members.
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spelling pubmed-85841632021-11-12 The Evolutionary History of Vertebrate Adhesion GPCRs and Its Implication on Their Classification Wittlake, Aline Prömel, Simone Schöneberg, Torsten Int J Mol Sci Article Adhesion G protein-coupled receptors (aGPCRs) form a structurally separate class of GPCRs with an unresolved evolutionary history and classification. Based on phylogenetic relations of human aGPCRs, nine families (A–G, L, V) were distinguished. Taking advantage of available genome data, we determined the aGPCR repertoires in all vertebrate classes. Although most aGPCR families show a high numerical stability in vertebrate genomes, the full repertoire of family E, F, and G members appeared only after the fish–tetrapod split. We did not find any evidence for new aGPCR families in vertebrates which are not present in the human genome. Based on ortholog sequence alignments, selection analysis clearly indicated two types of tetrapod aGPCRs: (i) aGPCR under strong purifying selection in tetrapod evolution (families A, B, D, L, V); and (ii) aGPCR with signatures of positive selection in some tetrapod linages (families C, E, G, F). The alignments of aGPCRs also allowed for a revised definition of reference positions within the seven-transmembrane-helix domain (relative position numbering scheme). Based on our phylogenetic cluster analysis, we suggest a revised nomenclature of aGPCRs including their transcript variants. Herein, the former families E and L are combined to one family (L) and GPR128/ADGRG7 forms a separate family (E). Furthermore, our analyses provide valuable information about the (patho)physiological relevance of individual aGPCR members. MDPI 2021-10-30 /pmc/articles/PMC8584163/ /pubmed/34769233 http://dx.doi.org/10.3390/ijms222111803 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wittlake, Aline
Prömel, Simone
Schöneberg, Torsten
The Evolutionary History of Vertebrate Adhesion GPCRs and Its Implication on Their Classification
title The Evolutionary History of Vertebrate Adhesion GPCRs and Its Implication on Their Classification
title_full The Evolutionary History of Vertebrate Adhesion GPCRs and Its Implication on Their Classification
title_fullStr The Evolutionary History of Vertebrate Adhesion GPCRs and Its Implication on Their Classification
title_full_unstemmed The Evolutionary History of Vertebrate Adhesion GPCRs and Its Implication on Their Classification
title_short The Evolutionary History of Vertebrate Adhesion GPCRs and Its Implication on Their Classification
title_sort evolutionary history of vertebrate adhesion gpcrs and its implication on their classification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8584163/
https://www.ncbi.nlm.nih.gov/pubmed/34769233
http://dx.doi.org/10.3390/ijms222111803
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