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Grape Small Auxin Upregulated RNA (SAUR) 041 Is a Candidate Regulator of Berry Size in Grape

Grape (Vitis vinifera) is an important horticultural crop that can be used to make juice and wine. However, the small size of the berry limits its yield. Cultivating larger berry varieties can be an effective way to solve this problem. As the largest family of auxin early response genes, SAUR (small...

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Autores principales: Li, Ming, Chen, Rui, Gu, Hong, Cheng, Dawei, Guo, Xizhi, Shi, Caiyun, Li, Lan, Xu, Guoyi, Gu, Shicao, Wu, Zhiyong, Chen, Jinyong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8584205/
https://www.ncbi.nlm.nih.gov/pubmed/34769249
http://dx.doi.org/10.3390/ijms222111818
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author Li, Ming
Chen, Rui
Gu, Hong
Cheng, Dawei
Guo, Xizhi
Shi, Caiyun
Li, Lan
Xu, Guoyi
Gu, Shicao
Wu, Zhiyong
Chen, Jinyong
author_facet Li, Ming
Chen, Rui
Gu, Hong
Cheng, Dawei
Guo, Xizhi
Shi, Caiyun
Li, Lan
Xu, Guoyi
Gu, Shicao
Wu, Zhiyong
Chen, Jinyong
author_sort Li, Ming
collection PubMed
description Grape (Vitis vinifera) is an important horticultural crop that can be used to make juice and wine. However, the small size of the berry limits its yield. Cultivating larger berry varieties can be an effective way to solve this problem. As the largest family of auxin early response genes, SAUR (small auxin upregulated RNA) plays an important role in the growth and development of plants. Berry size is one of the important factors that determine grape quality. However, the SAUR gene family’s function in berry size of grape has not been studied systematically. We identified 60 SAUR members in the grape genome and divided them into 12 subfamilies based on phylogenetic analysis. Subsequently, we conducted a comprehensive and systematic analysis on the SAUR gene family by analyzing distribution of key amino acid residues in the domain, structural features, conserved motifs, and protein interaction network, and combined with the heterologous expression in Arabidopsis and tomato. Finally, the member related to grape berry size in SAUR gene family were screened. This genome-wide study provides a systematic analysis of grape SAUR gene family, further understanding the potential functions of candidate genes, and provides a new idea for grape breeding.
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spelling pubmed-85842052021-11-12 Grape Small Auxin Upregulated RNA (SAUR) 041 Is a Candidate Regulator of Berry Size in Grape Li, Ming Chen, Rui Gu, Hong Cheng, Dawei Guo, Xizhi Shi, Caiyun Li, Lan Xu, Guoyi Gu, Shicao Wu, Zhiyong Chen, Jinyong Int J Mol Sci Article Grape (Vitis vinifera) is an important horticultural crop that can be used to make juice and wine. However, the small size of the berry limits its yield. Cultivating larger berry varieties can be an effective way to solve this problem. As the largest family of auxin early response genes, SAUR (small auxin upregulated RNA) plays an important role in the growth and development of plants. Berry size is one of the important factors that determine grape quality. However, the SAUR gene family’s function in berry size of grape has not been studied systematically. We identified 60 SAUR members in the grape genome and divided them into 12 subfamilies based on phylogenetic analysis. Subsequently, we conducted a comprehensive and systematic analysis on the SAUR gene family by analyzing distribution of key amino acid residues in the domain, structural features, conserved motifs, and protein interaction network, and combined with the heterologous expression in Arabidopsis and tomato. Finally, the member related to grape berry size in SAUR gene family were screened. This genome-wide study provides a systematic analysis of grape SAUR gene family, further understanding the potential functions of candidate genes, and provides a new idea for grape breeding. MDPI 2021-10-30 /pmc/articles/PMC8584205/ /pubmed/34769249 http://dx.doi.org/10.3390/ijms222111818 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Li, Ming
Chen, Rui
Gu, Hong
Cheng, Dawei
Guo, Xizhi
Shi, Caiyun
Li, Lan
Xu, Guoyi
Gu, Shicao
Wu, Zhiyong
Chen, Jinyong
Grape Small Auxin Upregulated RNA (SAUR) 041 Is a Candidate Regulator of Berry Size in Grape
title Grape Small Auxin Upregulated RNA (SAUR) 041 Is a Candidate Regulator of Berry Size in Grape
title_full Grape Small Auxin Upregulated RNA (SAUR) 041 Is a Candidate Regulator of Berry Size in Grape
title_fullStr Grape Small Auxin Upregulated RNA (SAUR) 041 Is a Candidate Regulator of Berry Size in Grape
title_full_unstemmed Grape Small Auxin Upregulated RNA (SAUR) 041 Is a Candidate Regulator of Berry Size in Grape
title_short Grape Small Auxin Upregulated RNA (SAUR) 041 Is a Candidate Regulator of Berry Size in Grape
title_sort grape small auxin upregulated rna (saur) 041 is a candidate regulator of berry size in grape
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8584205/
https://www.ncbi.nlm.nih.gov/pubmed/34769249
http://dx.doi.org/10.3390/ijms222111818
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