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Long term conservation of DNA at ambient temperature. Implications for DNA data storage

DNA conservation is central to many applications. This leads to an ever-increasing number of samples which are more and more difficult and costly to store or transport. A way to alleviate this problem is to develop procedures for storing samples at room temperature while maintaining their stability....

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Autores principales: Coudy, Delphine, Colotte, Marthe, Luis, Aurélie, Tuffet, Sophie, Bonnet, Jacques
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8585539/
https://www.ncbi.nlm.nih.gov/pubmed/34763344
http://dx.doi.org/10.1371/journal.pone.0259868
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author Coudy, Delphine
Colotte, Marthe
Luis, Aurélie
Tuffet, Sophie
Bonnet, Jacques
author_facet Coudy, Delphine
Colotte, Marthe
Luis, Aurélie
Tuffet, Sophie
Bonnet, Jacques
author_sort Coudy, Delphine
collection PubMed
description DNA conservation is central to many applications. This leads to an ever-increasing number of samples which are more and more difficult and costly to store or transport. A way to alleviate this problem is to develop procedures for storing samples at room temperature while maintaining their stability. A variety of commercial systems have been proposed but they fail to completely protect DNA from deleterious factors, mainly water. On the other side, Imagene company has developed a procedure for long-term conservation of biospecimen at room temperature based on the confinement of the samples under an anhydrous and anoxic atmosphere maintained inside hermetic capsules. The procedure has been validated by us and others for purified RNA, and for DNA in buffy coat or white blood cells lysates, but a precise determination of purified DNA stability is still lacking. We used the Arrhenius law to determine the DNA degradation rate at room temperature. We found that extrapolation to 25°C gave a degradation rate constant equivalent to about 1 cut/century/100 000 nucleotides, a stability several orders of magnitude larger than the current commercialized processes. Such a stability is fundamental for many applications such as the preservation of very large DNA molecules (particularly interesting in the context of genome sequencing) or oligonucleotides for DNA data storage. Capsules are also well suited for this latter application because of their high capacity. One can calculate that the 64 zettabytes of data produced in 2020 could be stored, standalone, for centuries, in about 20 kg of capsules.
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spelling pubmed-85855392021-11-12 Long term conservation of DNA at ambient temperature. Implications for DNA data storage Coudy, Delphine Colotte, Marthe Luis, Aurélie Tuffet, Sophie Bonnet, Jacques PLoS One Research Article DNA conservation is central to many applications. This leads to an ever-increasing number of samples which are more and more difficult and costly to store or transport. A way to alleviate this problem is to develop procedures for storing samples at room temperature while maintaining their stability. A variety of commercial systems have been proposed but they fail to completely protect DNA from deleterious factors, mainly water. On the other side, Imagene company has developed a procedure for long-term conservation of biospecimen at room temperature based on the confinement of the samples under an anhydrous and anoxic atmosphere maintained inside hermetic capsules. The procedure has been validated by us and others for purified RNA, and for DNA in buffy coat or white blood cells lysates, but a precise determination of purified DNA stability is still lacking. We used the Arrhenius law to determine the DNA degradation rate at room temperature. We found that extrapolation to 25°C gave a degradation rate constant equivalent to about 1 cut/century/100 000 nucleotides, a stability several orders of magnitude larger than the current commercialized processes. Such a stability is fundamental for many applications such as the preservation of very large DNA molecules (particularly interesting in the context of genome sequencing) or oligonucleotides for DNA data storage. Capsules are also well suited for this latter application because of their high capacity. One can calculate that the 64 zettabytes of data produced in 2020 could be stored, standalone, for centuries, in about 20 kg of capsules. Public Library of Science 2021-11-11 /pmc/articles/PMC8585539/ /pubmed/34763344 http://dx.doi.org/10.1371/journal.pone.0259868 Text en © 2021 Coudy et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Coudy, Delphine
Colotte, Marthe
Luis, Aurélie
Tuffet, Sophie
Bonnet, Jacques
Long term conservation of DNA at ambient temperature. Implications for DNA data storage
title Long term conservation of DNA at ambient temperature. Implications for DNA data storage
title_full Long term conservation of DNA at ambient temperature. Implications for DNA data storage
title_fullStr Long term conservation of DNA at ambient temperature. Implications for DNA data storage
title_full_unstemmed Long term conservation of DNA at ambient temperature. Implications for DNA data storage
title_short Long term conservation of DNA at ambient temperature. Implications for DNA data storage
title_sort long term conservation of dna at ambient temperature. implications for dna data storage
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8585539/
https://www.ncbi.nlm.nih.gov/pubmed/34763344
http://dx.doi.org/10.1371/journal.pone.0259868
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