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Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States
OBJECTIVE: We expanded the previous assessment of a mortality variable suited for real‐world evidence‐focused oncology research. DATA SOURCE: We used a nationwide electronic health record (EHR)‐derived de‐identified database. DATA COLLECTION: We included patients with at least 1 of 18 cancer types b...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Blackwell Publishing Ltd
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8586476/ https://www.ncbi.nlm.nih.gov/pubmed/33998685 http://dx.doi.org/10.1111/1475-6773.13669 |
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author | Zhang, Qianyi Gossai, Anala Monroe, Shirley Nussbaum, Nathan C. Parrinello, Christina M. |
author_facet | Zhang, Qianyi Gossai, Anala Monroe, Shirley Nussbaum, Nathan C. Parrinello, Christina M. |
author_sort | Zhang, Qianyi |
collection | PubMed |
description | OBJECTIVE: We expanded the previous assessment of a mortality variable suited for real‐world evidence‐focused oncology research. DATA SOURCE: We used a nationwide electronic health record (EHR)‐derived de‐identified database. DATA COLLECTION: We included patients with at least 1 of 18 cancer types between January 1, 2011 and December 31, 2017. Patient‐level structured data (EHRs, obituaries, and Social Security Death Index) and unstructured EHR data (abstracted) were linked to generate a composite mortality variable. STUDY DESIGN: We benchmarked sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and ±15‐day agreement against the National Death Index (NDI). Real‐world overall survival (rwOS) was estimated using the Kaplan‐Meier method. We performed sensitivity analyses using a smaller patient cohort that underwent next‐generation sequencing testing. PRINCIPAL FINDINGS: Compared with the NDI across 18 cancer types (overall N = 160 436): sensitivity, 83.9%‐91.5% (17/18 cancer types had sensitivity ≥85.0%); specificity, 93.5%‐99.7%; PPV, 96.3%‐98.3%; NPV, 75.0%‐98.7%; ±15‐day agreement, 95.6%‐97.6%; and median rwOS estimates ranging from 2.8% to 12.7% greater. Sensitivity analysis results (n = 17 540) were consistent with the main analysis. CONCLUSIONS: Across all cancer types analyzed, this composite mortality variable showed high sensitivity, specificity, PPV, NPV, and ±15‐day agreement, and yielded median rwOS values modestly overestimated when compared to NDI‐based results. |
format | Online Article Text |
id | pubmed-8586476 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Blackwell Publishing Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-85864762021-11-18 Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States Zhang, Qianyi Gossai, Anala Monroe, Shirley Nussbaum, Nathan C. Parrinello, Christina M. Health Serv Res Methods Corner OBJECTIVE: We expanded the previous assessment of a mortality variable suited for real‐world evidence‐focused oncology research. DATA SOURCE: We used a nationwide electronic health record (EHR)‐derived de‐identified database. DATA COLLECTION: We included patients with at least 1 of 18 cancer types between January 1, 2011 and December 31, 2017. Patient‐level structured data (EHRs, obituaries, and Social Security Death Index) and unstructured EHR data (abstracted) were linked to generate a composite mortality variable. STUDY DESIGN: We benchmarked sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and ±15‐day agreement against the National Death Index (NDI). Real‐world overall survival (rwOS) was estimated using the Kaplan‐Meier method. We performed sensitivity analyses using a smaller patient cohort that underwent next‐generation sequencing testing. PRINCIPAL FINDINGS: Compared with the NDI across 18 cancer types (overall N = 160 436): sensitivity, 83.9%‐91.5% (17/18 cancer types had sensitivity ≥85.0%); specificity, 93.5%‐99.7%; PPV, 96.3%‐98.3%; NPV, 75.0%‐98.7%; ±15‐day agreement, 95.6%‐97.6%; and median rwOS estimates ranging from 2.8% to 12.7% greater. Sensitivity analysis results (n = 17 540) were consistent with the main analysis. CONCLUSIONS: Across all cancer types analyzed, this composite mortality variable showed high sensitivity, specificity, PPV, NPV, and ±15‐day agreement, and yielded median rwOS values modestly overestimated when compared to NDI‐based results. Blackwell Publishing Ltd 2021-05-17 2021-12 /pmc/articles/PMC8586476/ /pubmed/33998685 http://dx.doi.org/10.1111/1475-6773.13669 Text en © 2021 Flatiron Health, Inc. Health Services Research published by Wiley Periodicals LLC on behalf of Health Research and Educational Trust. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Methods Corner Zhang, Qianyi Gossai, Anala Monroe, Shirley Nussbaum, Nathan C. Parrinello, Christina M. Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States |
title | Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States
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title_full | Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States
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title_fullStr | Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States
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title_full_unstemmed | Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States
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title_short | Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States
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title_sort | validation analysis of a composite real‐world mortality endpoint for patients with cancer in the united states |
topic | Methods Corner |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8586476/ https://www.ncbi.nlm.nih.gov/pubmed/33998685 http://dx.doi.org/10.1111/1475-6773.13669 |
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