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Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States

OBJECTIVE: We expanded the previous assessment of a mortality variable suited for real‐world evidence‐focused oncology research. DATA SOURCE: We used a nationwide electronic health record (EHR)‐derived de‐identified database. DATA COLLECTION: We included patients with at least 1 of 18 cancer types b...

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Autores principales: Zhang, Qianyi, Gossai, Anala, Monroe, Shirley, Nussbaum, Nathan C., Parrinello, Christina M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Blackwell Publishing Ltd 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8586476/
https://www.ncbi.nlm.nih.gov/pubmed/33998685
http://dx.doi.org/10.1111/1475-6773.13669
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author Zhang, Qianyi
Gossai, Anala
Monroe, Shirley
Nussbaum, Nathan C.
Parrinello, Christina M.
author_facet Zhang, Qianyi
Gossai, Anala
Monroe, Shirley
Nussbaum, Nathan C.
Parrinello, Christina M.
author_sort Zhang, Qianyi
collection PubMed
description OBJECTIVE: We expanded the previous assessment of a mortality variable suited for real‐world evidence‐focused oncology research. DATA SOURCE: We used a nationwide electronic health record (EHR)‐derived de‐identified database. DATA COLLECTION: We included patients with at least 1 of 18 cancer types between January 1, 2011 and December 31, 2017. Patient‐level structured data (EHRs, obituaries, and Social Security Death Index) and unstructured EHR data (abstracted) were linked to generate a composite mortality variable. STUDY DESIGN: We benchmarked sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and ±15‐day agreement against the National Death Index (NDI). Real‐world overall survival (rwOS) was estimated using the Kaplan‐Meier method. We performed sensitivity analyses using a smaller patient cohort that underwent next‐generation sequencing testing. PRINCIPAL FINDINGS: Compared with the NDI across 18 cancer types (overall N = 160 436): sensitivity, 83.9%‐91.5% (17/18 cancer types had sensitivity ≥85.0%); specificity, 93.5%‐99.7%; PPV, 96.3%‐98.3%; NPV, 75.0%‐98.7%; ±15‐day agreement, 95.6%‐97.6%; and median rwOS estimates ranging from 2.8% to 12.7% greater. Sensitivity analysis results (n = 17 540) were consistent with the main analysis. CONCLUSIONS: Across all cancer types analyzed, this composite mortality variable showed high sensitivity, specificity, PPV, NPV, and ±15‐day agreement, and yielded median rwOS values modestly overestimated when compared to NDI‐based results.
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spelling pubmed-85864762021-11-18 Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States Zhang, Qianyi Gossai, Anala Monroe, Shirley Nussbaum, Nathan C. Parrinello, Christina M. Health Serv Res Methods Corner OBJECTIVE: We expanded the previous assessment of a mortality variable suited for real‐world evidence‐focused oncology research. DATA SOURCE: We used a nationwide electronic health record (EHR)‐derived de‐identified database. DATA COLLECTION: We included patients with at least 1 of 18 cancer types between January 1, 2011 and December 31, 2017. Patient‐level structured data (EHRs, obituaries, and Social Security Death Index) and unstructured EHR data (abstracted) were linked to generate a composite mortality variable. STUDY DESIGN: We benchmarked sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and ±15‐day agreement against the National Death Index (NDI). Real‐world overall survival (rwOS) was estimated using the Kaplan‐Meier method. We performed sensitivity analyses using a smaller patient cohort that underwent next‐generation sequencing testing. PRINCIPAL FINDINGS: Compared with the NDI across 18 cancer types (overall N = 160 436): sensitivity, 83.9%‐91.5% (17/18 cancer types had sensitivity ≥85.0%); specificity, 93.5%‐99.7%; PPV, 96.3%‐98.3%; NPV, 75.0%‐98.7%; ±15‐day agreement, 95.6%‐97.6%; and median rwOS estimates ranging from 2.8% to 12.7% greater. Sensitivity analysis results (n = 17 540) were consistent with the main analysis. CONCLUSIONS: Across all cancer types analyzed, this composite mortality variable showed high sensitivity, specificity, PPV, NPV, and ±15‐day agreement, and yielded median rwOS values modestly overestimated when compared to NDI‐based results. Blackwell Publishing Ltd 2021-05-17 2021-12 /pmc/articles/PMC8586476/ /pubmed/33998685 http://dx.doi.org/10.1111/1475-6773.13669 Text en © 2021 Flatiron Health, Inc. Health Services Research published by Wiley Periodicals LLC on behalf of Health Research and Educational Trust. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Methods Corner
Zhang, Qianyi
Gossai, Anala
Monroe, Shirley
Nussbaum, Nathan C.
Parrinello, Christina M.
Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States
title Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States
title_full Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States
title_fullStr Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States
title_full_unstemmed Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States
title_short Validation analysis of a composite real‐world mortality endpoint for patients with cancer in the United States
title_sort validation analysis of a composite real‐world mortality endpoint for patients with cancer in the united states
topic Methods Corner
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8586476/
https://www.ncbi.nlm.nih.gov/pubmed/33998685
http://dx.doi.org/10.1111/1475-6773.13669
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