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What Does Time-Dependent Fluorescence Shift (TDFS) in Biomembranes (and Proteins) Report on?

The organization of biomolecules and bioassemblies is highly governed by the nature and extent of their interactions with water. These interactions are of high intricacy and a broad range of methods based on various principles have been introduced to characterize them. As these methods view the hydr...

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Autores principales: Scollo, Federica, Evci, Hüseyin, Amaro, Mariana, Jurkiewicz, Piotr, Sykora, Jan, Hof, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8586494/
https://www.ncbi.nlm.nih.gov/pubmed/34778202
http://dx.doi.org/10.3389/fchem.2021.738350
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author Scollo, Federica
Evci, Hüseyin
Amaro, Mariana
Jurkiewicz, Piotr
Sykora, Jan
Hof, Martin
author_facet Scollo, Federica
Evci, Hüseyin
Amaro, Mariana
Jurkiewicz, Piotr
Sykora, Jan
Hof, Martin
author_sort Scollo, Federica
collection PubMed
description The organization of biomolecules and bioassemblies is highly governed by the nature and extent of their interactions with water. These interactions are of high intricacy and a broad range of methods based on various principles have been introduced to characterize them. As these methods view the hydration phenomena differently (e.g., in terms of time and length scales), a detailed insight in each particular technique is to promote the overall understanding of the stunning “hydration world.” In this prospective mini-review we therefore critically examine time-dependent fluorescence shift (TDFS)—an experimental method with a high potential for studying the hydration in the biological systems. We demonstrate that TDFS is very useful especially for phospholipid bilayers for mapping the interfacial region formed by the hydrated lipid headgroups. TDFS, when properly applied, reports on the degree of hydration and mobility of the hydrated phospholipid segments in the close vicinity of the fluorophore embedded in the bilayer. Here, the interpretation of the recorded TDFS parameters are thoroughly discussed, also in the context of the findings obtained by other experimental techniques addressing the hydration phenomena (e.g., molecular dynamics simulations, NMR spectroscopy, scattering techniques, etc.). The differences in the interpretations of TDFS outputs between phospholipid biomembranes and proteins are also addressed. Additionally, prerequisites for the successful TDFS application are presented (i.e., the proper choice of fluorescence dye for TDFS studies, and TDFS instrumentation). Finally, the effects of ions and oxidized phospholipids on the bilayer organization and headgroup packing viewed from TDFS perspective are presented as application examples.
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spelling pubmed-85864942021-11-13 What Does Time-Dependent Fluorescence Shift (TDFS) in Biomembranes (and Proteins) Report on? Scollo, Federica Evci, Hüseyin Amaro, Mariana Jurkiewicz, Piotr Sykora, Jan Hof, Martin Front Chem Chemistry The organization of biomolecules and bioassemblies is highly governed by the nature and extent of their interactions with water. These interactions are of high intricacy and a broad range of methods based on various principles have been introduced to characterize them. As these methods view the hydration phenomena differently (e.g., in terms of time and length scales), a detailed insight in each particular technique is to promote the overall understanding of the stunning “hydration world.” In this prospective mini-review we therefore critically examine time-dependent fluorescence shift (TDFS)—an experimental method with a high potential for studying the hydration in the biological systems. We demonstrate that TDFS is very useful especially for phospholipid bilayers for mapping the interfacial region formed by the hydrated lipid headgroups. TDFS, when properly applied, reports on the degree of hydration and mobility of the hydrated phospholipid segments in the close vicinity of the fluorophore embedded in the bilayer. Here, the interpretation of the recorded TDFS parameters are thoroughly discussed, also in the context of the findings obtained by other experimental techniques addressing the hydration phenomena (e.g., molecular dynamics simulations, NMR spectroscopy, scattering techniques, etc.). The differences in the interpretations of TDFS outputs between phospholipid biomembranes and proteins are also addressed. Additionally, prerequisites for the successful TDFS application are presented (i.e., the proper choice of fluorescence dye for TDFS studies, and TDFS instrumentation). Finally, the effects of ions and oxidized phospholipids on the bilayer organization and headgroup packing viewed from TDFS perspective are presented as application examples. Frontiers Media S.A. 2021-10-29 /pmc/articles/PMC8586494/ /pubmed/34778202 http://dx.doi.org/10.3389/fchem.2021.738350 Text en Copyright © 2021 Scollo, Evci, Amaro, Jurkiewicz, Sykora and Hof. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Chemistry
Scollo, Federica
Evci, Hüseyin
Amaro, Mariana
Jurkiewicz, Piotr
Sykora, Jan
Hof, Martin
What Does Time-Dependent Fluorescence Shift (TDFS) in Biomembranes (and Proteins) Report on?
title What Does Time-Dependent Fluorescence Shift (TDFS) in Biomembranes (and Proteins) Report on?
title_full What Does Time-Dependent Fluorescence Shift (TDFS) in Biomembranes (and Proteins) Report on?
title_fullStr What Does Time-Dependent Fluorescence Shift (TDFS) in Biomembranes (and Proteins) Report on?
title_full_unstemmed What Does Time-Dependent Fluorescence Shift (TDFS) in Biomembranes (and Proteins) Report on?
title_short What Does Time-Dependent Fluorescence Shift (TDFS) in Biomembranes (and Proteins) Report on?
title_sort what does time-dependent fluorescence shift (tdfs) in biomembranes (and proteins) report on?
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8586494/
https://www.ncbi.nlm.nih.gov/pubmed/34778202
http://dx.doi.org/10.3389/fchem.2021.738350
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