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Accurate pancreas segmentation using multi-level pyramidal pooling residual U-Net with adversarial mechanism
BACKGROUND: A novel multi-level pyramidal pooling residual U-Net with adversarial mechanism was proposed for organ segmentation from medical imaging, and was conducted on the challenging NIH Pancreas-CT dataset. METHODS: The 82 pancreatic contrast-enhanced abdominal CT volumes were split via four-fo...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8588719/ https://www.ncbi.nlm.nih.gov/pubmed/34772359 http://dx.doi.org/10.1186/s12880-021-00694-1 |
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author | Li, Meiyu Lian, Fenghui Wang, Chunyu Guo, Shuxu |
author_facet | Li, Meiyu Lian, Fenghui Wang, Chunyu Guo, Shuxu |
author_sort | Li, Meiyu |
collection | PubMed |
description | BACKGROUND: A novel multi-level pyramidal pooling residual U-Net with adversarial mechanism was proposed for organ segmentation from medical imaging, and was conducted on the challenging NIH Pancreas-CT dataset. METHODS: The 82 pancreatic contrast-enhanced abdominal CT volumes were split via four-fold cross validation to test the model performance. In order to achieve accurate segmentation, we firstly involved residual learning into an adversarial U-Net to achieve a better gradient information flow for improving segmentation performance. Then, we introduced a multi-level pyramidal pooling module (MLPP), where a novel pyramidal pooling was involved to gather contextual information for segmentation, then four groups of structures consisted of a different number of pyramidal pooling blocks were proposed to search for the structure with the optimal performance, and two types of pooling blocks were applied in the experimental section to further assess the robustness of MLPP for pancreas segmentation. For evaluation, Dice similarity coefficient (DSC) and recall were used as the metrics in this work. RESULTS: The proposed method preceded the baseline network 5.30% and 6.16% on metrics DSC and recall, and achieved competitive results compared with the-state-of-art methods. CONCLUSIONS: Our algorithm showed great segmentation performance even on the particularly challenging pancreas dataset, this indicates that the proposed model is a satisfactory and promising segmentor. |
format | Online Article Text |
id | pubmed-8588719 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-85887192021-11-15 Accurate pancreas segmentation using multi-level pyramidal pooling residual U-Net with adversarial mechanism Li, Meiyu Lian, Fenghui Wang, Chunyu Guo, Shuxu BMC Med Imaging Research BACKGROUND: A novel multi-level pyramidal pooling residual U-Net with adversarial mechanism was proposed for organ segmentation from medical imaging, and was conducted on the challenging NIH Pancreas-CT dataset. METHODS: The 82 pancreatic contrast-enhanced abdominal CT volumes were split via four-fold cross validation to test the model performance. In order to achieve accurate segmentation, we firstly involved residual learning into an adversarial U-Net to achieve a better gradient information flow for improving segmentation performance. Then, we introduced a multi-level pyramidal pooling module (MLPP), where a novel pyramidal pooling was involved to gather contextual information for segmentation, then four groups of structures consisted of a different number of pyramidal pooling blocks were proposed to search for the structure with the optimal performance, and two types of pooling blocks were applied in the experimental section to further assess the robustness of MLPP for pancreas segmentation. For evaluation, Dice similarity coefficient (DSC) and recall were used as the metrics in this work. RESULTS: The proposed method preceded the baseline network 5.30% and 6.16% on metrics DSC and recall, and achieved competitive results compared with the-state-of-art methods. CONCLUSIONS: Our algorithm showed great segmentation performance even on the particularly challenging pancreas dataset, this indicates that the proposed model is a satisfactory and promising segmentor. BioMed Central 2021-11-12 /pmc/articles/PMC8588719/ /pubmed/34772359 http://dx.doi.org/10.1186/s12880-021-00694-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Li, Meiyu Lian, Fenghui Wang, Chunyu Guo, Shuxu Accurate pancreas segmentation using multi-level pyramidal pooling residual U-Net with adversarial mechanism |
title | Accurate pancreas segmentation using multi-level pyramidal pooling residual U-Net with adversarial mechanism |
title_full | Accurate pancreas segmentation using multi-level pyramidal pooling residual U-Net with adversarial mechanism |
title_fullStr | Accurate pancreas segmentation using multi-level pyramidal pooling residual U-Net with adversarial mechanism |
title_full_unstemmed | Accurate pancreas segmentation using multi-level pyramidal pooling residual U-Net with adversarial mechanism |
title_short | Accurate pancreas segmentation using multi-level pyramidal pooling residual U-Net with adversarial mechanism |
title_sort | accurate pancreas segmentation using multi-level pyramidal pooling residual u-net with adversarial mechanism |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8588719/ https://www.ncbi.nlm.nih.gov/pubmed/34772359 http://dx.doi.org/10.1186/s12880-021-00694-1 |
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