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Prediction of COVID-19 epidemic situation via fine-tuned IndRNN

The COVID-19 pandemic is the most serious catastrophe since the Second World War. To predict the epidemic more accurately under the influence of policies, a framework based on Independently Recurrent Neural Network (IndRNN) with fine-tuning are proposed for predict the epidemic development trend of...

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Autores principales: Hong, Zhonghua, Fan, Ziyang, Tong, Xiaohua, Zhou, Ruyan, Pan, Haiyan, Zhang, Yun, Han, Yanling, Wang, Jing, Yang, Shuhu, Wu, Hong, Li, Jiahao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8592248/
https://www.ncbi.nlm.nih.gov/pubmed/34825057
http://dx.doi.org/10.7717/peerj-cs.770
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author Hong, Zhonghua
Fan, Ziyang
Tong, Xiaohua
Zhou, Ruyan
Pan, Haiyan
Zhang, Yun
Han, Yanling
Wang, Jing
Yang, Shuhu
Wu, Hong
Li, Jiahao
author_facet Hong, Zhonghua
Fan, Ziyang
Tong, Xiaohua
Zhou, Ruyan
Pan, Haiyan
Zhang, Yun
Han, Yanling
Wang, Jing
Yang, Shuhu
Wu, Hong
Li, Jiahao
author_sort Hong, Zhonghua
collection PubMed
description The COVID-19 pandemic is the most serious catastrophe since the Second World War. To predict the epidemic more accurately under the influence of policies, a framework based on Independently Recurrent Neural Network (IndRNN) with fine-tuning are proposed for predict the epidemic development trend of confirmed cases and deaths in the United Stated, India, Brazil, France, Russia, China, and the world to late May, 2021. The proposed framework consists of four main steps: data pre-processing, model pre-training and weight saving, the weight fine-tuning, trend predicting and validating. It is concluded that the proposed framework based on IndRNN and fine-tuning with high speed and low complexity, has great fitting and prediction performance. The applied fine-tuning strategy can effectively reduce the error by up to 20.94% and time cost. For most of the countries, the MAPEs of fine-tuned IndRNN model were less than 1.2%, the minimum MAPE and RMSE were 0.05%, and 1.17, respectively, by using Chinese deaths, during the testing phase. According to the prediction and validation results, the MAPEs of the proposed framework were less than 6.2% in most cases, and it generated lowest MAPE and RMSE values of 0.05% and 2.14, respectively, for deaths in China. Moreover, Policies that play an important role in the development of COVID-19 have been summarized. Timely and appropriate measures can greatly reduce the spread of COVID-19; untimely and inappropriate government policies, lax regulations, and insufficient public cooperation are the reasons for the aggravation of the epidemic situations. The code is available at https://github.com/zhhongsh/COVID19-Precdiction. And the prediction by IndRNN model with fine-tuning are now available online (http://47.117.160.245:8088/IndRNNPredict).
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spelling pubmed-85922482021-11-24 Prediction of COVID-19 epidemic situation via fine-tuned IndRNN Hong, Zhonghua Fan, Ziyang Tong, Xiaohua Zhou, Ruyan Pan, Haiyan Zhang, Yun Han, Yanling Wang, Jing Yang, Shuhu Wu, Hong Li, Jiahao PeerJ Comput Sci Bioinformatics The COVID-19 pandemic is the most serious catastrophe since the Second World War. To predict the epidemic more accurately under the influence of policies, a framework based on Independently Recurrent Neural Network (IndRNN) with fine-tuning are proposed for predict the epidemic development trend of confirmed cases and deaths in the United Stated, India, Brazil, France, Russia, China, and the world to late May, 2021. The proposed framework consists of four main steps: data pre-processing, model pre-training and weight saving, the weight fine-tuning, trend predicting and validating. It is concluded that the proposed framework based on IndRNN and fine-tuning with high speed and low complexity, has great fitting and prediction performance. The applied fine-tuning strategy can effectively reduce the error by up to 20.94% and time cost. For most of the countries, the MAPEs of fine-tuned IndRNN model were less than 1.2%, the minimum MAPE and RMSE were 0.05%, and 1.17, respectively, by using Chinese deaths, during the testing phase. According to the prediction and validation results, the MAPEs of the proposed framework were less than 6.2% in most cases, and it generated lowest MAPE and RMSE values of 0.05% and 2.14, respectively, for deaths in China. Moreover, Policies that play an important role in the development of COVID-19 have been summarized. Timely and appropriate measures can greatly reduce the spread of COVID-19; untimely and inappropriate government policies, lax regulations, and insufficient public cooperation are the reasons for the aggravation of the epidemic situations. The code is available at https://github.com/zhhongsh/COVID19-Precdiction. And the prediction by IndRNN model with fine-tuning are now available online (http://47.117.160.245:8088/IndRNNPredict). PeerJ Inc. 2021-11-12 /pmc/articles/PMC8592248/ /pubmed/34825057 http://dx.doi.org/10.7717/peerj-cs.770 Text en ©2021 Hong et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Hong, Zhonghua
Fan, Ziyang
Tong, Xiaohua
Zhou, Ruyan
Pan, Haiyan
Zhang, Yun
Han, Yanling
Wang, Jing
Yang, Shuhu
Wu, Hong
Li, Jiahao
Prediction of COVID-19 epidemic situation via fine-tuned IndRNN
title Prediction of COVID-19 epidemic situation via fine-tuned IndRNN
title_full Prediction of COVID-19 epidemic situation via fine-tuned IndRNN
title_fullStr Prediction of COVID-19 epidemic situation via fine-tuned IndRNN
title_full_unstemmed Prediction of COVID-19 epidemic situation via fine-tuned IndRNN
title_short Prediction of COVID-19 epidemic situation via fine-tuned IndRNN
title_sort prediction of covid-19 epidemic situation via fine-tuned indrnn
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8592248/
https://www.ncbi.nlm.nih.gov/pubmed/34825057
http://dx.doi.org/10.7717/peerj-cs.770
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