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Metaheuristics for pharmacometrics

Metaheuristics is a powerful optimization tool that is increasingly used across disciplines to tackle general purpose optimization problems. Nature‐inspired metaheuristic algorithms is a subclass of metaheuristic algorithms and have been shown to be particularly flexible and useful in solving compli...

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Autores principales: Kim, Seongho, Hooker, Andrew C., Shi, Yu, Kim, Grace Hyun J., Wong, Weng Kee
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8592519/
https://www.ncbi.nlm.nih.gov/pubmed/34562342
http://dx.doi.org/10.1002/psp4.12714
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author Kim, Seongho
Hooker, Andrew C.
Shi, Yu
Kim, Grace Hyun J.
Wong, Weng Kee
author_facet Kim, Seongho
Hooker, Andrew C.
Shi, Yu
Kim, Grace Hyun J.
Wong, Weng Kee
author_sort Kim, Seongho
collection PubMed
description Metaheuristics is a powerful optimization tool that is increasingly used across disciplines to tackle general purpose optimization problems. Nature‐inspired metaheuristic algorithms is a subclass of metaheuristic algorithms and have been shown to be particularly flexible and useful in solving complicated optimization problems in computer science and engineering. A common practice with metaheuristics is to hybridize it with another suitably chosen algorithm for enhanced performance. This paper reviews metaheuristic algorithms and demonstrates some of its utility in tackling pharmacometric problems. Specifically, we provide three applications using one of its most celebrated members, particle swarm optimization (PSO), and show that PSO can effectively estimate parameters in complicated nonlinear mixed‐effects models and to gain insights into statistical identifiability issues in a complex compartment model. In the third application, we demonstrate how to hybridize PSO with sparse grid, which is an often‐used technique to evaluate high dimensional integrals, to search for [Formula: see text] ‐efficient designs for estimating parameters in nonlinear mixed‐effects models with a count outcome. We also show the proposed hybrid algorithm outperforms its competitors when sparse grid is replaced by its competitor, adaptive gaussian quadrature to approximate the integral, or when PSO is replaced by three notable nature‐inspired metaheuristic algorithms.
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spelling pubmed-85925192021-11-22 Metaheuristics for pharmacometrics Kim, Seongho Hooker, Andrew C. Shi, Yu Kim, Grace Hyun J. Wong, Weng Kee CPT Pharmacometrics Syst Pharmacol Review Metaheuristics is a powerful optimization tool that is increasingly used across disciplines to tackle general purpose optimization problems. Nature‐inspired metaheuristic algorithms is a subclass of metaheuristic algorithms and have been shown to be particularly flexible and useful in solving complicated optimization problems in computer science and engineering. A common practice with metaheuristics is to hybridize it with another suitably chosen algorithm for enhanced performance. This paper reviews metaheuristic algorithms and demonstrates some of its utility in tackling pharmacometric problems. Specifically, we provide three applications using one of its most celebrated members, particle swarm optimization (PSO), and show that PSO can effectively estimate parameters in complicated nonlinear mixed‐effects models and to gain insights into statistical identifiability issues in a complex compartment model. In the third application, we demonstrate how to hybridize PSO with sparse grid, which is an often‐used technique to evaluate high dimensional integrals, to search for [Formula: see text] ‐efficient designs for estimating parameters in nonlinear mixed‐effects models with a count outcome. We also show the proposed hybrid algorithm outperforms its competitors when sparse grid is replaced by its competitor, adaptive gaussian quadrature to approximate the integral, or when PSO is replaced by three notable nature‐inspired metaheuristic algorithms. John Wiley and Sons Inc. 2021-10-22 2021-11 /pmc/articles/PMC8592519/ /pubmed/34562342 http://dx.doi.org/10.1002/psp4.12714 Text en © 2021 The Authors. CPT: Pharmacometrics & Systems Pharmacology published by Wiley Periodicals LLC on behalf of American Society for Clinical Pharmacology and Therapeutics. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Review
Kim, Seongho
Hooker, Andrew C.
Shi, Yu
Kim, Grace Hyun J.
Wong, Weng Kee
Metaheuristics for pharmacometrics
title Metaheuristics for pharmacometrics
title_full Metaheuristics for pharmacometrics
title_fullStr Metaheuristics for pharmacometrics
title_full_unstemmed Metaheuristics for pharmacometrics
title_short Metaheuristics for pharmacometrics
title_sort metaheuristics for pharmacometrics
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8592519/
https://www.ncbi.nlm.nih.gov/pubmed/34562342
http://dx.doi.org/10.1002/psp4.12714
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