Cargando…
Metaheuristics for pharmacometrics
Metaheuristics is a powerful optimization tool that is increasingly used across disciplines to tackle general purpose optimization problems. Nature‐inspired metaheuristic algorithms is a subclass of metaheuristic algorithms and have been shown to be particularly flexible and useful in solving compli...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8592519/ https://www.ncbi.nlm.nih.gov/pubmed/34562342 http://dx.doi.org/10.1002/psp4.12714 |
_version_ | 1784599482476789760 |
---|---|
author | Kim, Seongho Hooker, Andrew C. Shi, Yu Kim, Grace Hyun J. Wong, Weng Kee |
author_facet | Kim, Seongho Hooker, Andrew C. Shi, Yu Kim, Grace Hyun J. Wong, Weng Kee |
author_sort | Kim, Seongho |
collection | PubMed |
description | Metaheuristics is a powerful optimization tool that is increasingly used across disciplines to tackle general purpose optimization problems. Nature‐inspired metaheuristic algorithms is a subclass of metaheuristic algorithms and have been shown to be particularly flexible and useful in solving complicated optimization problems in computer science and engineering. A common practice with metaheuristics is to hybridize it with another suitably chosen algorithm for enhanced performance. This paper reviews metaheuristic algorithms and demonstrates some of its utility in tackling pharmacometric problems. Specifically, we provide three applications using one of its most celebrated members, particle swarm optimization (PSO), and show that PSO can effectively estimate parameters in complicated nonlinear mixed‐effects models and to gain insights into statistical identifiability issues in a complex compartment model. In the third application, we demonstrate how to hybridize PSO with sparse grid, which is an often‐used technique to evaluate high dimensional integrals, to search for [Formula: see text] ‐efficient designs for estimating parameters in nonlinear mixed‐effects models with a count outcome. We also show the proposed hybrid algorithm outperforms its competitors when sparse grid is replaced by its competitor, adaptive gaussian quadrature to approximate the integral, or when PSO is replaced by three notable nature‐inspired metaheuristic algorithms. |
format | Online Article Text |
id | pubmed-8592519 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-85925192021-11-22 Metaheuristics for pharmacometrics Kim, Seongho Hooker, Andrew C. Shi, Yu Kim, Grace Hyun J. Wong, Weng Kee CPT Pharmacometrics Syst Pharmacol Review Metaheuristics is a powerful optimization tool that is increasingly used across disciplines to tackle general purpose optimization problems. Nature‐inspired metaheuristic algorithms is a subclass of metaheuristic algorithms and have been shown to be particularly flexible and useful in solving complicated optimization problems in computer science and engineering. A common practice with metaheuristics is to hybridize it with another suitably chosen algorithm for enhanced performance. This paper reviews metaheuristic algorithms and demonstrates some of its utility in tackling pharmacometric problems. Specifically, we provide three applications using one of its most celebrated members, particle swarm optimization (PSO), and show that PSO can effectively estimate parameters in complicated nonlinear mixed‐effects models and to gain insights into statistical identifiability issues in a complex compartment model. In the third application, we demonstrate how to hybridize PSO with sparse grid, which is an often‐used technique to evaluate high dimensional integrals, to search for [Formula: see text] ‐efficient designs for estimating parameters in nonlinear mixed‐effects models with a count outcome. We also show the proposed hybrid algorithm outperforms its competitors when sparse grid is replaced by its competitor, adaptive gaussian quadrature to approximate the integral, or when PSO is replaced by three notable nature‐inspired metaheuristic algorithms. John Wiley and Sons Inc. 2021-10-22 2021-11 /pmc/articles/PMC8592519/ /pubmed/34562342 http://dx.doi.org/10.1002/psp4.12714 Text en © 2021 The Authors. CPT: Pharmacometrics & Systems Pharmacology published by Wiley Periodicals LLC on behalf of American Society for Clinical Pharmacology and Therapeutics. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Review Kim, Seongho Hooker, Andrew C. Shi, Yu Kim, Grace Hyun J. Wong, Weng Kee Metaheuristics for pharmacometrics |
title | Metaheuristics for pharmacometrics |
title_full | Metaheuristics for pharmacometrics |
title_fullStr | Metaheuristics for pharmacometrics |
title_full_unstemmed | Metaheuristics for pharmacometrics |
title_short | Metaheuristics for pharmacometrics |
title_sort | metaheuristics for pharmacometrics |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8592519/ https://www.ncbi.nlm.nih.gov/pubmed/34562342 http://dx.doi.org/10.1002/psp4.12714 |
work_keys_str_mv | AT kimseongho metaheuristicsforpharmacometrics AT hookerandrewc metaheuristicsforpharmacometrics AT shiyu metaheuristicsforpharmacometrics AT kimgracehyunj metaheuristicsforpharmacometrics AT wongwengkee metaheuristicsforpharmacometrics |