Cargando…
Complete chloroplast genome of Baccaurea ramiflora (phyllanthaceae), a promising underutilized species
Baccaurea ramiflora is a high economic value for the exploitation and utilization of wild fruit tree species with edible and medicinal values in Southeast Asia. In this study, the complete chloroplast genome sequence of B. ramiflora was assembled and characterized. The chloroplast genome was 161,089...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8592581/ https://www.ncbi.nlm.nih.gov/pubmed/34790869 http://dx.doi.org/10.1080/23802359.2021.1997105 |
_version_ | 1784599492138369024 |
---|---|
author | Hu, Gang Wu, Hongping Zhang, Zhonghua Li, Lei |
author_facet | Hu, Gang Wu, Hongping Zhang, Zhonghua Li, Lei |
author_sort | Hu, Gang |
collection | PubMed |
description | Baccaurea ramiflora is a high economic value for the exploitation and utilization of wild fruit tree species with edible and medicinal values in Southeast Asia. In this study, the complete chloroplast genome sequence of B. ramiflora was assembled and characterized. The chloroplast genome was 161,089 bp in length, consisting of a large single copy (LSC) of 89,515 bp and a small single copy (SSC) region of 18,826 bp, which were separated by a pair of 26,374 bp inverted repeat (IR) regions. The overall GC content was 36.71%. A total of 132 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes were identified. A low intraspecies variation within B. ramiflora was found with 22 single nucleotide polymorphisms (SNPs) and 17 insertions and deletions (INDELs). Phylogenetic tree reconstructed by 14 chloroplast genomes revealed that B. ramiflora clusters together with species of Phyllanthus, Glochidion, and Flueggea. |
format | Online Article Text |
id | pubmed-8592581 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-85925812021-11-16 Complete chloroplast genome of Baccaurea ramiflora (phyllanthaceae), a promising underutilized species Hu, Gang Wu, Hongping Zhang, Zhonghua Li, Lei Mitochondrial DNA B Resour Mitogenome Announcement Baccaurea ramiflora is a high economic value for the exploitation and utilization of wild fruit tree species with edible and medicinal values in Southeast Asia. In this study, the complete chloroplast genome sequence of B. ramiflora was assembled and characterized. The chloroplast genome was 161,089 bp in length, consisting of a large single copy (LSC) of 89,515 bp and a small single copy (SSC) region of 18,826 bp, which were separated by a pair of 26,374 bp inverted repeat (IR) regions. The overall GC content was 36.71%. A total of 132 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes were identified. A low intraspecies variation within B. ramiflora was found with 22 single nucleotide polymorphisms (SNPs) and 17 insertions and deletions (INDELs). Phylogenetic tree reconstructed by 14 chloroplast genomes revealed that B. ramiflora clusters together with species of Phyllanthus, Glochidion, and Flueggea. Taylor & Francis 2021-11-11 /pmc/articles/PMC8592581/ /pubmed/34790869 http://dx.doi.org/10.1080/23802359.2021.1997105 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Hu, Gang Wu, Hongping Zhang, Zhonghua Li, Lei Complete chloroplast genome of Baccaurea ramiflora (phyllanthaceae), a promising underutilized species |
title | Complete chloroplast genome of Baccaurea ramiflora (phyllanthaceae), a promising underutilized species |
title_full | Complete chloroplast genome of Baccaurea ramiflora (phyllanthaceae), a promising underutilized species |
title_fullStr | Complete chloroplast genome of Baccaurea ramiflora (phyllanthaceae), a promising underutilized species |
title_full_unstemmed | Complete chloroplast genome of Baccaurea ramiflora (phyllanthaceae), a promising underutilized species |
title_short | Complete chloroplast genome of Baccaurea ramiflora (phyllanthaceae), a promising underutilized species |
title_sort | complete chloroplast genome of baccaurea ramiflora (phyllanthaceae), a promising underutilized species |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8592581/ https://www.ncbi.nlm.nih.gov/pubmed/34790869 http://dx.doi.org/10.1080/23802359.2021.1997105 |
work_keys_str_mv | AT hugang completechloroplastgenomeofbaccaurearamifloraphyllanthaceaeapromisingunderutilizedspecies AT wuhongping completechloroplastgenomeofbaccaurearamifloraphyllanthaceaeapromisingunderutilizedspecies AT zhangzhonghua completechloroplastgenomeofbaccaurearamifloraphyllanthaceaeapromisingunderutilizedspecies AT lilei completechloroplastgenomeofbaccaurearamifloraphyllanthaceaeapromisingunderutilizedspecies |