Cargando…

The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards

Problem framing is critical to developing risk prediction models because all subsequent development work and evaluation takes place within the context of how a problem has been framed and explicit documentation of framing choices makes it easier to compare evaluation metrics between published studie...

Descripción completa

Detalles Bibliográficos
Autores principales: Lauritsen, Simon Meyer, Thiesson, Bo, Jørgensen, Marianne Johansson, Riis, Anders Hammerich, Espelund, Ulrick Skipper, Weile, Jesper Bo, Lange, Jeppe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8593052/
https://www.ncbi.nlm.nih.gov/pubmed/34782696
http://dx.doi.org/10.1038/s41746-021-00529-x
_version_ 1784599628198445056
author Lauritsen, Simon Meyer
Thiesson, Bo
Jørgensen, Marianne Johansson
Riis, Anders Hammerich
Espelund, Ulrick Skipper
Weile, Jesper Bo
Lange, Jeppe
author_facet Lauritsen, Simon Meyer
Thiesson, Bo
Jørgensen, Marianne Johansson
Riis, Anders Hammerich
Espelund, Ulrick Skipper
Weile, Jesper Bo
Lange, Jeppe
author_sort Lauritsen, Simon Meyer
collection PubMed
description Problem framing is critical to developing risk prediction models because all subsequent development work and evaluation takes place within the context of how a problem has been framed and explicit documentation of framing choices makes it easier to compare evaluation metrics between published studies. In this work, we introduce the basic concepts of framing, including prediction windows, observation windows, window shifts and event-triggers for a prediction that strongly affects the risk of clinician fatigue caused by false positives. Building on this, we apply four different framing structures to the same generic dataset, using a sepsis risk prediction model as an example, and evaluate how framing affects model performance and learning. Our results show that an apparently good model with strong evaluation results in both discrimination and calibration is not necessarily clinically usable. Therefore, it is important to assess the results of objective evaluations within the context of more subjective evaluations of how a model is framed.
format Online
Article
Text
id pubmed-8593052
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-85930522021-11-17 The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards Lauritsen, Simon Meyer Thiesson, Bo Jørgensen, Marianne Johansson Riis, Anders Hammerich Espelund, Ulrick Skipper Weile, Jesper Bo Lange, Jeppe NPJ Digit Med Article Problem framing is critical to developing risk prediction models because all subsequent development work and evaluation takes place within the context of how a problem has been framed and explicit documentation of framing choices makes it easier to compare evaluation metrics between published studies. In this work, we introduce the basic concepts of framing, including prediction windows, observation windows, window shifts and event-triggers for a prediction that strongly affects the risk of clinician fatigue caused by false positives. Building on this, we apply four different framing structures to the same generic dataset, using a sepsis risk prediction model as an example, and evaluate how framing affects model performance and learning. Our results show that an apparently good model with strong evaluation results in both discrimination and calibration is not necessarily clinically usable. Therefore, it is important to assess the results of objective evaluations within the context of more subjective evaluations of how a model is framed. Nature Publishing Group UK 2021-11-15 /pmc/articles/PMC8593052/ /pubmed/34782696 http://dx.doi.org/10.1038/s41746-021-00529-x Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Lauritsen, Simon Meyer
Thiesson, Bo
Jørgensen, Marianne Johansson
Riis, Anders Hammerich
Espelund, Ulrick Skipper
Weile, Jesper Bo
Lange, Jeppe
The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards
title The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards
title_full The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards
title_fullStr The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards
title_full_unstemmed The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards
title_short The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards
title_sort framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8593052/
https://www.ncbi.nlm.nih.gov/pubmed/34782696
http://dx.doi.org/10.1038/s41746-021-00529-x
work_keys_str_mv AT lauritsensimonmeyer theframingofmachinelearningriskpredictionmodelsillustratedbyevaluationofsepsisingeneralwards
AT thiessonbo theframingofmachinelearningriskpredictionmodelsillustratedbyevaluationofsepsisingeneralwards
AT jørgensenmariannejohansson theframingofmachinelearningriskpredictionmodelsillustratedbyevaluationofsepsisingeneralwards
AT riisandershammerich theframingofmachinelearningriskpredictionmodelsillustratedbyevaluationofsepsisingeneralwards
AT espelundulrickskipper theframingofmachinelearningriskpredictionmodelsillustratedbyevaluationofsepsisingeneralwards
AT weilejesperbo theframingofmachinelearningriskpredictionmodelsillustratedbyevaluationofsepsisingeneralwards
AT langejeppe theframingofmachinelearningriskpredictionmodelsillustratedbyevaluationofsepsisingeneralwards
AT lauritsensimonmeyer framingofmachinelearningriskpredictionmodelsillustratedbyevaluationofsepsisingeneralwards
AT thiessonbo framingofmachinelearningriskpredictionmodelsillustratedbyevaluationofsepsisingeneralwards
AT jørgensenmariannejohansson framingofmachinelearningriskpredictionmodelsillustratedbyevaluationofsepsisingeneralwards
AT riisandershammerich framingofmachinelearningriskpredictionmodelsillustratedbyevaluationofsepsisingeneralwards
AT espelundulrickskipper framingofmachinelearningriskpredictionmodelsillustratedbyevaluationofsepsisingeneralwards
AT weilejesperbo framingofmachinelearningriskpredictionmodelsillustratedbyevaluationofsepsisingeneralwards
AT langejeppe framingofmachinelearningriskpredictionmodelsillustratedbyevaluationofsepsisingeneralwards