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The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards
Problem framing is critical to developing risk prediction models because all subsequent development work and evaluation takes place within the context of how a problem has been framed and explicit documentation of framing choices makes it easier to compare evaluation metrics between published studie...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8593052/ https://www.ncbi.nlm.nih.gov/pubmed/34782696 http://dx.doi.org/10.1038/s41746-021-00529-x |
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author | Lauritsen, Simon Meyer Thiesson, Bo Jørgensen, Marianne Johansson Riis, Anders Hammerich Espelund, Ulrick Skipper Weile, Jesper Bo Lange, Jeppe |
author_facet | Lauritsen, Simon Meyer Thiesson, Bo Jørgensen, Marianne Johansson Riis, Anders Hammerich Espelund, Ulrick Skipper Weile, Jesper Bo Lange, Jeppe |
author_sort | Lauritsen, Simon Meyer |
collection | PubMed |
description | Problem framing is critical to developing risk prediction models because all subsequent development work and evaluation takes place within the context of how a problem has been framed and explicit documentation of framing choices makes it easier to compare evaluation metrics between published studies. In this work, we introduce the basic concepts of framing, including prediction windows, observation windows, window shifts and event-triggers for a prediction that strongly affects the risk of clinician fatigue caused by false positives. Building on this, we apply four different framing structures to the same generic dataset, using a sepsis risk prediction model as an example, and evaluate how framing affects model performance and learning. Our results show that an apparently good model with strong evaluation results in both discrimination and calibration is not necessarily clinically usable. Therefore, it is important to assess the results of objective evaluations within the context of more subjective evaluations of how a model is framed. |
format | Online Article Text |
id | pubmed-8593052 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-85930522021-11-17 The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards Lauritsen, Simon Meyer Thiesson, Bo Jørgensen, Marianne Johansson Riis, Anders Hammerich Espelund, Ulrick Skipper Weile, Jesper Bo Lange, Jeppe NPJ Digit Med Article Problem framing is critical to developing risk prediction models because all subsequent development work and evaluation takes place within the context of how a problem has been framed and explicit documentation of framing choices makes it easier to compare evaluation metrics between published studies. In this work, we introduce the basic concepts of framing, including prediction windows, observation windows, window shifts and event-triggers for a prediction that strongly affects the risk of clinician fatigue caused by false positives. Building on this, we apply four different framing structures to the same generic dataset, using a sepsis risk prediction model as an example, and evaluate how framing affects model performance and learning. Our results show that an apparently good model with strong evaluation results in both discrimination and calibration is not necessarily clinically usable. Therefore, it is important to assess the results of objective evaluations within the context of more subjective evaluations of how a model is framed. Nature Publishing Group UK 2021-11-15 /pmc/articles/PMC8593052/ /pubmed/34782696 http://dx.doi.org/10.1038/s41746-021-00529-x Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Lauritsen, Simon Meyer Thiesson, Bo Jørgensen, Marianne Johansson Riis, Anders Hammerich Espelund, Ulrick Skipper Weile, Jesper Bo Lange, Jeppe The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards |
title | The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards |
title_full | The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards |
title_fullStr | The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards |
title_full_unstemmed | The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards |
title_short | The Framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards |
title_sort | framing of machine learning risk prediction models illustrated by evaluation of sepsis in general wards |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8593052/ https://www.ncbi.nlm.nih.gov/pubmed/34782696 http://dx.doi.org/10.1038/s41746-021-00529-x |
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