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A Newly Defined Pyroptosis-Related Gene Signature for the Prognosis of Bladder Cancer

BACKGROUND: Bladder cancer (BC), as the most common urinary system tumor type and the main cause of tumor-related death, has an unsatisfactory prognosis. In recent years, related literature has proposed that cell pyroptosis is an inflammatory form of programmed cell death. However, in BC, the relati...

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Autores principales: Chen, Weikang, Zhang, Wenhao, Zhou, Tao, Cai, Jian, Yu, Zhixian, Wu, Zhigang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Dove 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8594790/
https://www.ncbi.nlm.nih.gov/pubmed/34803395
http://dx.doi.org/10.2147/IJGM.S337735
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author Chen, Weikang
Zhang, Wenhao
Zhou, Tao
Cai, Jian
Yu, Zhixian
Wu, Zhigang
author_facet Chen, Weikang
Zhang, Wenhao
Zhou, Tao
Cai, Jian
Yu, Zhixian
Wu, Zhigang
author_sort Chen, Weikang
collection PubMed
description BACKGROUND: Bladder cancer (BC), as the most common urinary system tumor type and the main cause of tumor-related death, has an unsatisfactory prognosis. In recent years, related literature has proposed that cell pyroptosis is an inflammatory form of programmed cell death. However, in BC, the relationship between the expression of pyroptosis-related genes and the prognosis has not been elucidated. METHODS: We got the RNA sequencing data from TCGA and GEO datasets. Fifty-two pyroptosis-related genes were extracted for further explore. Then, we compared the gene expression levels between the normal bladder and BC tissues. After that, we develop and validate a pyroptosis-related gene prognostic model and made following functional enrichment analysis and single-sample gene set enrichment analysis of the differentially expressed genes between the high- and low-risk groups. RESULTS: Twenty-nine differentially expressed genes (DEGs) were found between normal and tumor tissues. Based on the median score calculated by the risk score formula from 8 pyroptosis-related genes, 414 patients were equally divided into low- and high-risk subgroups. The survival probability of BC patients in the high-risk group was significantly lower than that in the low-risk group (P < 0.001). Through multivariate analysis, our risk score is an independent factor predicting OS in BC patients. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis show that high-risk populations are rich in immune-related genes and have a decreased immune status. All the above results have been externally verified from GEO cohort. CONCLUSION: Pyroptosis-related genes are closely related to tumor immunity and are a potential prognostic tool for predicting BCs.
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spelling pubmed-85947902021-11-18 A Newly Defined Pyroptosis-Related Gene Signature for the Prognosis of Bladder Cancer Chen, Weikang Zhang, Wenhao Zhou, Tao Cai, Jian Yu, Zhixian Wu, Zhigang Int J Gen Med Original Research BACKGROUND: Bladder cancer (BC), as the most common urinary system tumor type and the main cause of tumor-related death, has an unsatisfactory prognosis. In recent years, related literature has proposed that cell pyroptosis is an inflammatory form of programmed cell death. However, in BC, the relationship between the expression of pyroptosis-related genes and the prognosis has not been elucidated. METHODS: We got the RNA sequencing data from TCGA and GEO datasets. Fifty-two pyroptosis-related genes were extracted for further explore. Then, we compared the gene expression levels between the normal bladder and BC tissues. After that, we develop and validate a pyroptosis-related gene prognostic model and made following functional enrichment analysis and single-sample gene set enrichment analysis of the differentially expressed genes between the high- and low-risk groups. RESULTS: Twenty-nine differentially expressed genes (DEGs) were found between normal and tumor tissues. Based on the median score calculated by the risk score formula from 8 pyroptosis-related genes, 414 patients were equally divided into low- and high-risk subgroups. The survival probability of BC patients in the high-risk group was significantly lower than that in the low-risk group (P < 0.001). Through multivariate analysis, our risk score is an independent factor predicting OS in BC patients. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis show that high-risk populations are rich in immune-related genes and have a decreased immune status. All the above results have been externally verified from GEO cohort. CONCLUSION: Pyroptosis-related genes are closely related to tumor immunity and are a potential prognostic tool for predicting BCs. Dove 2021-11-12 /pmc/articles/PMC8594790/ /pubmed/34803395 http://dx.doi.org/10.2147/IJGM.S337735 Text en © 2021 Chen et al. https://creativecommons.org/licenses/by-nc/3.0/This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/ (https://creativecommons.org/licenses/by-nc/3.0/) ). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php).
spellingShingle Original Research
Chen, Weikang
Zhang, Wenhao
Zhou, Tao
Cai, Jian
Yu, Zhixian
Wu, Zhigang
A Newly Defined Pyroptosis-Related Gene Signature for the Prognosis of Bladder Cancer
title A Newly Defined Pyroptosis-Related Gene Signature for the Prognosis of Bladder Cancer
title_full A Newly Defined Pyroptosis-Related Gene Signature for the Prognosis of Bladder Cancer
title_fullStr A Newly Defined Pyroptosis-Related Gene Signature for the Prognosis of Bladder Cancer
title_full_unstemmed A Newly Defined Pyroptosis-Related Gene Signature for the Prognosis of Bladder Cancer
title_short A Newly Defined Pyroptosis-Related Gene Signature for the Prognosis of Bladder Cancer
title_sort newly defined pyroptosis-related gene signature for the prognosis of bladder cancer
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8594790/
https://www.ncbi.nlm.nih.gov/pubmed/34803395
http://dx.doi.org/10.2147/IJGM.S337735
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