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The complete chloroplast genome and phylogenetic analysis of Astragalus scaberrimus Bunge 1833
Astragalus scaberrimus Bunge 1833 is a widespread perennial herb in northern China. The plant has white flowers and white hairs on the leaves and stems. To determine the chloroplast genome, total DNA was extracted from a sample and sequenced on the Illumina HiSeq4000 platform. After sequencing, the...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8594883/ https://www.ncbi.nlm.nih.gov/pubmed/34796264 http://dx.doi.org/10.1080/23802359.2021.1997108 |
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author | Guo, Yupeng Yao, Buqing Yuan, Mengran Li, Junqiao |
author_facet | Guo, Yupeng Yao, Buqing Yuan, Mengran Li, Junqiao |
author_sort | Guo, Yupeng |
collection | PubMed |
description | Astragalus scaberrimus Bunge 1833 is a widespread perennial herb in northern China. The plant has white flowers and white hairs on the leaves and stems. To determine the chloroplast genome, total DNA was extracted from a sample and sequenced on the Illumina HiSeq4000 platform. After sequencing, the reads of chloroplast DNA were assembled and annotated via NOVOPlasty and PGA respectively. The chloroplast genome of this plant has a circular form with a length of 123,492 bp, a 34% GC content and IR loss. After annotation, a total of 113 genes were predicted for this cp genome, comprising 79 encoded proteins, 4 rRNAs and 30 tRNAs. The evolutionary history indicates that A. scaberrimus was grouped within Astragalus and formed a clade with Astragalus laxmannii with a 100% BS support value. The complete chloroplast genome can serve as a reference for future studies on molecular biology, evolution, population genetics, taxonomy and resource protection. |
format | Online Article Text |
id | pubmed-8594883 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-85948832021-11-17 The complete chloroplast genome and phylogenetic analysis of Astragalus scaberrimus Bunge 1833 Guo, Yupeng Yao, Buqing Yuan, Mengran Li, Junqiao Mitochondrial DNA B Resour Mitogenome Announcement Astragalus scaberrimus Bunge 1833 is a widespread perennial herb in northern China. The plant has white flowers and white hairs on the leaves and stems. To determine the chloroplast genome, total DNA was extracted from a sample and sequenced on the Illumina HiSeq4000 platform. After sequencing, the reads of chloroplast DNA were assembled and annotated via NOVOPlasty and PGA respectively. The chloroplast genome of this plant has a circular form with a length of 123,492 bp, a 34% GC content and IR loss. After annotation, a total of 113 genes were predicted for this cp genome, comprising 79 encoded proteins, 4 rRNAs and 30 tRNAs. The evolutionary history indicates that A. scaberrimus was grouped within Astragalus and formed a clade with Astragalus laxmannii with a 100% BS support value. The complete chloroplast genome can serve as a reference for future studies on molecular biology, evolution, population genetics, taxonomy and resource protection. Taylor & Francis 2021-11-10 /pmc/articles/PMC8594883/ /pubmed/34796264 http://dx.doi.org/10.1080/23802359.2021.1997108 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Guo, Yupeng Yao, Buqing Yuan, Mengran Li, Junqiao The complete chloroplast genome and phylogenetic analysis of Astragalus scaberrimus Bunge 1833 |
title | The complete chloroplast genome and phylogenetic analysis of Astragalus scaberrimus Bunge 1833 |
title_full | The complete chloroplast genome and phylogenetic analysis of Astragalus scaberrimus Bunge 1833 |
title_fullStr | The complete chloroplast genome and phylogenetic analysis of Astragalus scaberrimus Bunge 1833 |
title_full_unstemmed | The complete chloroplast genome and phylogenetic analysis of Astragalus scaberrimus Bunge 1833 |
title_short | The complete chloroplast genome and phylogenetic analysis of Astragalus scaberrimus Bunge 1833 |
title_sort | complete chloroplast genome and phylogenetic analysis of astragalus scaberrimus bunge 1833 |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8594883/ https://www.ncbi.nlm.nih.gov/pubmed/34796264 http://dx.doi.org/10.1080/23802359.2021.1997108 |
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