Cargando…

3D Interaction Homology: Computational Titration of Aspartic Acid, Glutamic Acid and Histidine Can Create pH-Tunable Hydropathic Environment Maps

Aspartic acid, glutamic acid and histidine are ionizable residues occupying various protein environments and perform many different functions in structures. Their roles are tied to their acid/base equilibria, solvent exposure, and backbone conformations. We propose that the number of unique environm...

Descripción completa

Detalles Bibliográficos
Autores principales:	Herrington, Noah B., Kellogg, Glen E.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2021
Materias:	Molecular Biosciences
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8595396/ https://www.ncbi.nlm.nih.gov/pubmed/34805282 http://dx.doi.org/10.3389/fmolb.2021.773385

Ejemplares similares

3D interaction homology: The hydrophobic residues alanine, isoleucine, leucine, proline and valine play different structural roles in soluble and membrane proteins
por: AL Mughram, Mohammed H., et al.
Publicado: (2023)

3D interaction homology: Hydropathic interaction environments of serine and cysteine are strikingly different and their roles adapt in membrane proteins()
por: Catalano, Claudio, et al.
Publicado: (2021)

Thermal decomposition of the amino acids glycine, cysteine, aspartic acid, asparagine, glutamic acid, glutamine, arginine and histidine
por: Weiss, Ingrid M., et al.
Publicado: (2018)

Hydropathic and Other Establishments
Publicado: (1901)

From oncoproteins to spike proteins: the evaluation of intramolecular stability using hydropathic force field
por: Agosta, Federica, et al.
Publicado: (2022)

Matlock House Hydropathic Establishment
Publicado: (1902)

Hydropathic characteristics of adenovirus hexons
por: Li, Q.-G., et al.
Publicado: (1997)

Applying an Empirical Hydropathic Forcefield in Refinement May Improve Low-Resolution Protein X-Ray Crystal Structures
por: Koparde, Vishal N., et al.
Publicado: (2011)

Dietary glutamic acid and aspartic acid as biomarkers for predicting diabetic retinopathy
por: Park, So Young, et al.
Publicado: (2021)

Lipid-Dependent Titration of Glutamic Acid at a Bilayer Membrane Interface
por: McKay, Matthew J., et al.
Publicado: (2021)

Effect of aspartic acid and glutamate on metabolism and acid stress resistance of Acetobacter pasteurianus
por: Yin, Haisong, et al.
Publicado: (2017)

”Hydropathic Highway to Health”: women and water-cure in antebellum America
por: Warner, John Harley
Publicado: (1987)

Binding and transport of D-aspartate by the glutamate transporter homolog Glt(Tk)
por: Arkhipova, Valentina, et al.
Publicado: (2019)

Human D-aspartate Oxidase: A Key Player in D-aspartate Metabolism
por: Pollegioni, Loredano, et al.
Publicado: (2021)

Linchpins empower promiscuous electrophiles to enable site-selective modification of histidine and aspartic acid in proteins
por: Rawale, Dattatraya Gautam, et al.
Publicado: (2021)

Mitochondrial Carriers for Aspartate, Glutamate and Other Amino Acids: A Review
por: Monné, Magnus, et al.
Publicado: (2019)

Enzyme Kinetics by Isothermal Titration Calorimetry: Allostery, Inhibition, and Dynamics
por: Wang, Yun, et al.
Publicado: (2020)

Structural investigation of human cystine/glutamate antiporter system x(c) (−) (Sx(c) (−)) using homology modeling and molecular dynamics
por: Hang, Tran Dieu, et al.
Publicado: (2022)

Hydropathicity-based prediction of pain-causing NaV1.7 variants
por: Xenakis, Makros N., et al.
Publicado: (2021)

Searching for Osmosensing Determinants in Poplar Histidine-Aspartate Kinases
por: Makhokh, Hanae, et al.
Publicado: (2023)

Determination of Histidine Protonation States in Proteins by Fast Magic Angle Spinning NMR
por: Zadorozhnyi, Roman, et al.
Publicado: (2021)

Thermal titration molecular dynamics (TTMD): shedding light on the stability of RNA-small molecule complexes
por: Dodaro, Andrea, et al.
Publicado: (2023)

Physiological, Nutritional and Metabolomic Responses of Tomato Plants After the Foliar Application of Amino Acids Aspartic Acid, Glutamic Acid and Alanine
por: Alfosea-Simón, Marina, et al.
Publicado: (2021)

ODP549 From Positive to Negative, a Histidine to Aspartic Acid Change in SDHB is Breaking Bad in Cardiac Paraganglioma
por: Harbuz-Miller, Inga, et al.
Publicado: (2022)

d-Amino Acid Peptide Residualizing Agents for Protein Radioiodination: Effect of Aspartate for Glutamate Substitution
por: Pruszynski, Marek, et al.
Publicado: (2018)

Aspartate-glutamate carrier 2 (citrin): a role in glucose and amino acid metabolism in the liver
por: Holeček, Milan
Publicado: (2023)

CONDUCTIVITY TITRATION OF GELATIN SOLUTIONS WITH ACIDS
por: Hitchcock, David I.
Publicado: (1923)

Precise Coulometric Titration of Acids and Bases
por: Taylor, John K., et al.
Publicado: (1959)

Position of the Third Na(+) Site in the Aspartate Transporter Glt(Ph) and the Human Glutamate Transporter, EAAT1
por: Bastug, Turgut, et al.
Publicado: (2012)

Editorial: Computational methods for protein characterization: in memoriam of Donald Abraham
por: Spyrakis, Francesca, et al.
Publicado: (2023)

Endogenous pH, Titratable Acidity and Total Soluble Solid Content of Mouthwashes Available in the Brazilian Market
por: Cavalcanti, Alessandro Leite, et al.
Publicado: (2010)

FeCl(3)-Mediated Side Chain Modification of Aspartic Acid- and Glutamic Acid-Containing Peptides on a Solid Support
por: Giri, Rajat Subhra, et al.
Publicado: (2017)

Low-protein diets supplemented with glutamic acid or aspartic acid ameliorate intestinal damage in weaned piglets challenged with hydrogen peroxide
por: Chen, Shuai, et al.
Publicado: (2021)

A stepwise mutagenesis approach using histidine and acidic amino acid to engineer highly pH-dependent protein switches
por: Zou, Wenjun, et al.
Publicado: (2021)

Editorial: Enzymes Regulating the Homeostasis of Agonists and Antagonists of the N-Methyl D-Aspartate Receptors
por: Mozzarelli, Andrea, et al.
Publicado: (2019)

Reprogramming of Amino Acid Transporters to Support Aspartate and Glutamate Dependency Sustains Endocrine Resistance in Breast Cancer
por: Bacci, Marina, et al.
Publicado: (2019)

Comparison of Dissolution and Surface Reactions Between Calcite and Aragonite in L-Glutamic and L-Aspartic Acid Solutions
por: Ryu, Miyoung, et al.
Publicado: (2010)

Injectable Hyaluronic Acid/Poly(γ-glutamic acid) Hydrogel with Step-by-step Tunable Properties for Soft Tissue Engineering
por: Ma, Xue-Bin, et al.
Publicado: (2021)

Sorption of aspartic and glutamic aminoacids on calcined hydrotalcite
por: Silvério, Fabiano, et al.
Publicado: (2013)

Glutamate Carrier Involvement in Mitochondrial Dysfunctioning in the Brain White Matter
por: Hillen, Anne E. J., et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_c52gduoin7qcrknkhhtmpb1d4a