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Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation

The cannabinoid receptor 1 (CB1) is a class A G-protein coupled receptor (GPCR) that can exert various effects on the human body through the endocannabinoid system. Understanding CB1 activation has many benefits for the medical use of cannabinoids. A previous study reported that CB1 has two notable...

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Autores principales: Ji, Sangho, Yang, Wonjin, Yu, Wookyung
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8595625/
https://www.ncbi.nlm.nih.gov/pubmed/34785728
http://dx.doi.org/10.1038/s41598-021-01767-5
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author Ji, Sangho
Yang, Wonjin
Yu, Wookyung
author_facet Ji, Sangho
Yang, Wonjin
Yu, Wookyung
author_sort Ji, Sangho
collection PubMed
description The cannabinoid receptor 1 (CB1) is a class A G-protein coupled receptor (GPCR) that can exert various effects on the human body through the endocannabinoid system. Understanding CB1 activation has many benefits for the medical use of cannabinoids. A previous study reported that CB1 has two notable residues referred to as the toggle switch, F3.36 and W6.48, which are important for its activation mechanism. We performed a molecular dynamics simulation with a mutation in the toggle switch to examine its role in active and inactive states. We also examined structural changes, the residue–residue interaction network, and the interaction network among helices and loops of wildtype and mutant CB1 for both activation states. As a result, we found that the energetic changes in the hydrogen-bond network of the Na(+) pocket, extracellular N-terminus–TM2–ECL1–TM3 interface including D2.63–K3.28 salt-bridge, and extracellular ECL2–TM5–ECL3–TM6 interface directly linked to the toggle switch contribute to the stability of CB1 by the broken aromatic interaction of the toggle switch. It makes the conformation of inactive CB1 receptor to be unstable. Our study explained the role of the toggle switch regarding the energetic interactions related to the Na(+) pocket and extracellular loop interfaces, which could contribute to a better understanding of the activation mechanism of CB1.
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spelling pubmed-85956252021-11-17 Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation Ji, Sangho Yang, Wonjin Yu, Wookyung Sci Rep Article The cannabinoid receptor 1 (CB1) is a class A G-protein coupled receptor (GPCR) that can exert various effects on the human body through the endocannabinoid system. Understanding CB1 activation has many benefits for the medical use of cannabinoids. A previous study reported that CB1 has two notable residues referred to as the toggle switch, F3.36 and W6.48, which are important for its activation mechanism. We performed a molecular dynamics simulation with a mutation in the toggle switch to examine its role in active and inactive states. We also examined structural changes, the residue–residue interaction network, and the interaction network among helices and loops of wildtype and mutant CB1 for both activation states. As a result, we found that the energetic changes in the hydrogen-bond network of the Na(+) pocket, extracellular N-terminus–TM2–ECL1–TM3 interface including D2.63–K3.28 salt-bridge, and extracellular ECL2–TM5–ECL3–TM6 interface directly linked to the toggle switch contribute to the stability of CB1 by the broken aromatic interaction of the toggle switch. It makes the conformation of inactive CB1 receptor to be unstable. Our study explained the role of the toggle switch regarding the energetic interactions related to the Na(+) pocket and extracellular loop interfaces, which could contribute to a better understanding of the activation mechanism of CB1. Nature Publishing Group UK 2021-11-16 /pmc/articles/PMC8595625/ /pubmed/34785728 http://dx.doi.org/10.1038/s41598-021-01767-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Ji, Sangho
Yang, Wonjin
Yu, Wookyung
Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation
title Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation
title_full Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation
title_fullStr Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation
title_full_unstemmed Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation
title_short Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation
title_sort understanding the role of the cb1 toggle switch in interaction networks using molecular dynamics simulation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8595625/
https://www.ncbi.nlm.nih.gov/pubmed/34785728
http://dx.doi.org/10.1038/s41598-021-01767-5
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