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Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation
The cannabinoid receptor 1 (CB1) is a class A G-protein coupled receptor (GPCR) that can exert various effects on the human body through the endocannabinoid system. Understanding CB1 activation has many benefits for the medical use of cannabinoids. A previous study reported that CB1 has two notable...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8595625/ https://www.ncbi.nlm.nih.gov/pubmed/34785728 http://dx.doi.org/10.1038/s41598-021-01767-5 |
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author | Ji, Sangho Yang, Wonjin Yu, Wookyung |
author_facet | Ji, Sangho Yang, Wonjin Yu, Wookyung |
author_sort | Ji, Sangho |
collection | PubMed |
description | The cannabinoid receptor 1 (CB1) is a class A G-protein coupled receptor (GPCR) that can exert various effects on the human body through the endocannabinoid system. Understanding CB1 activation has many benefits for the medical use of cannabinoids. A previous study reported that CB1 has two notable residues referred to as the toggle switch, F3.36 and W6.48, which are important for its activation mechanism. We performed a molecular dynamics simulation with a mutation in the toggle switch to examine its role in active and inactive states. We also examined structural changes, the residue–residue interaction network, and the interaction network among helices and loops of wildtype and mutant CB1 for both activation states. As a result, we found that the energetic changes in the hydrogen-bond network of the Na(+) pocket, extracellular N-terminus–TM2–ECL1–TM3 interface including D2.63–K3.28 salt-bridge, and extracellular ECL2–TM5–ECL3–TM6 interface directly linked to the toggle switch contribute to the stability of CB1 by the broken aromatic interaction of the toggle switch. It makes the conformation of inactive CB1 receptor to be unstable. Our study explained the role of the toggle switch regarding the energetic interactions related to the Na(+) pocket and extracellular loop interfaces, which could contribute to a better understanding of the activation mechanism of CB1. |
format | Online Article Text |
id | pubmed-8595625 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-85956252021-11-17 Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation Ji, Sangho Yang, Wonjin Yu, Wookyung Sci Rep Article The cannabinoid receptor 1 (CB1) is a class A G-protein coupled receptor (GPCR) that can exert various effects on the human body through the endocannabinoid system. Understanding CB1 activation has many benefits for the medical use of cannabinoids. A previous study reported that CB1 has two notable residues referred to as the toggle switch, F3.36 and W6.48, which are important for its activation mechanism. We performed a molecular dynamics simulation with a mutation in the toggle switch to examine its role in active and inactive states. We also examined structural changes, the residue–residue interaction network, and the interaction network among helices and loops of wildtype and mutant CB1 for both activation states. As a result, we found that the energetic changes in the hydrogen-bond network of the Na(+) pocket, extracellular N-terminus–TM2–ECL1–TM3 interface including D2.63–K3.28 salt-bridge, and extracellular ECL2–TM5–ECL3–TM6 interface directly linked to the toggle switch contribute to the stability of CB1 by the broken aromatic interaction of the toggle switch. It makes the conformation of inactive CB1 receptor to be unstable. Our study explained the role of the toggle switch regarding the energetic interactions related to the Na(+) pocket and extracellular loop interfaces, which could contribute to a better understanding of the activation mechanism of CB1. Nature Publishing Group UK 2021-11-16 /pmc/articles/PMC8595625/ /pubmed/34785728 http://dx.doi.org/10.1038/s41598-021-01767-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Ji, Sangho Yang, Wonjin Yu, Wookyung Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation |
title | Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation |
title_full | Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation |
title_fullStr | Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation |
title_full_unstemmed | Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation |
title_short | Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation |
title_sort | understanding the role of the cb1 toggle switch in interaction networks using molecular dynamics simulation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8595625/ https://www.ncbi.nlm.nih.gov/pubmed/34785728 http://dx.doi.org/10.1038/s41598-021-01767-5 |
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