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Programmable viscoelasticity in protein-RNA condensates with disordered sticker-spacer polypeptides

Liquid-liquid phase separation of multivalent proteins and RNAs drives the formation of biomolecular condensates that facilitate membrane-free compartmentalization of subcellular processes. With recent advances, it is becoming increasingly clear that biomolecular condensates are network fluids with...

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Autores principales: Alshareedah, Ibraheem, Moosa, Mahdi Muhammad, Pham, Matthew, Potoyan, Davit A., Banerjee, Priya R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8595643/
https://www.ncbi.nlm.nih.gov/pubmed/34785657
http://dx.doi.org/10.1038/s41467-021-26733-7
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author Alshareedah, Ibraheem
Moosa, Mahdi Muhammad
Pham, Matthew
Potoyan, Davit A.
Banerjee, Priya R.
author_facet Alshareedah, Ibraheem
Moosa, Mahdi Muhammad
Pham, Matthew
Potoyan, Davit A.
Banerjee, Priya R.
author_sort Alshareedah, Ibraheem
collection PubMed
description Liquid-liquid phase separation of multivalent proteins and RNAs drives the formation of biomolecular condensates that facilitate membrane-free compartmentalization of subcellular processes. With recent advances, it is becoming increasingly clear that biomolecular condensates are network fluids with time-dependent material properties. Here, employing microrheology with optical tweezers, we reveal molecular determinants that govern the viscoelastic behavior of condensates formed by multivalent Arg/Gly-rich sticker-spacer polypeptides and RNA. These condensates behave as Maxwell fluids with an elastically-dominant rheological response at shorter timescales and a liquid-like behavior at longer timescales. The viscous and elastic regimes of these condensates can be tuned by the polypeptide and RNA sequences as well as their mixture compositions. Our results establish a quantitative link between the sequence- and structure-encoded biomolecular interactions at the microscopic scale and the rheological properties of the resulting condensates at the mesoscale, enabling a route to systematically probe and rationally engineer biomolecular condensates with programmable mechanics.
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spelling pubmed-85956432021-11-19 Programmable viscoelasticity in protein-RNA condensates with disordered sticker-spacer polypeptides Alshareedah, Ibraheem Moosa, Mahdi Muhammad Pham, Matthew Potoyan, Davit A. Banerjee, Priya R. Nat Commun Article Liquid-liquid phase separation of multivalent proteins and RNAs drives the formation of biomolecular condensates that facilitate membrane-free compartmentalization of subcellular processes. With recent advances, it is becoming increasingly clear that biomolecular condensates are network fluids with time-dependent material properties. Here, employing microrheology with optical tweezers, we reveal molecular determinants that govern the viscoelastic behavior of condensates formed by multivalent Arg/Gly-rich sticker-spacer polypeptides and RNA. These condensates behave as Maxwell fluids with an elastically-dominant rheological response at shorter timescales and a liquid-like behavior at longer timescales. The viscous and elastic regimes of these condensates can be tuned by the polypeptide and RNA sequences as well as their mixture compositions. Our results establish a quantitative link between the sequence- and structure-encoded biomolecular interactions at the microscopic scale and the rheological properties of the resulting condensates at the mesoscale, enabling a route to systematically probe and rationally engineer biomolecular condensates with programmable mechanics. Nature Publishing Group UK 2021-11-16 /pmc/articles/PMC8595643/ /pubmed/34785657 http://dx.doi.org/10.1038/s41467-021-26733-7 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Alshareedah, Ibraheem
Moosa, Mahdi Muhammad
Pham, Matthew
Potoyan, Davit A.
Banerjee, Priya R.
Programmable viscoelasticity in protein-RNA condensates with disordered sticker-spacer polypeptides
title Programmable viscoelasticity in protein-RNA condensates with disordered sticker-spacer polypeptides
title_full Programmable viscoelasticity in protein-RNA condensates with disordered sticker-spacer polypeptides
title_fullStr Programmable viscoelasticity in protein-RNA condensates with disordered sticker-spacer polypeptides
title_full_unstemmed Programmable viscoelasticity in protein-RNA condensates with disordered sticker-spacer polypeptides
title_short Programmable viscoelasticity in protein-RNA condensates with disordered sticker-spacer polypeptides
title_sort programmable viscoelasticity in protein-rna condensates with disordered sticker-spacer polypeptides
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8595643/
https://www.ncbi.nlm.nih.gov/pubmed/34785657
http://dx.doi.org/10.1038/s41467-021-26733-7
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