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Mapping gradient nonlinearity and miscalibration using diffusion‐weighted MR images of a uniform isotropic phantom
PURPOSE: To use diffusion measurements to map the spatial dependence of the magnetic field produced by the gradient coils of an MRI scanner with sufficient accuracy to correct errors in quantitative diffusion MRI (DMRI) caused by gradient nonlinearity and gradient amplifier miscalibration. THEORY AN...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8596767/ https://www.ncbi.nlm.nih.gov/pubmed/34351007 http://dx.doi.org/10.1002/mrm.28890 |
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author | Barnett, Alan Seth Irfanoglu, M. Okan Landman, Bennett Rogers, Baxter Pierpaoli, Carlo |
author_facet | Barnett, Alan Seth Irfanoglu, M. Okan Landman, Bennett Rogers, Baxter Pierpaoli, Carlo |
author_sort | Barnett, Alan Seth |
collection | PubMed |
description | PURPOSE: To use diffusion measurements to map the spatial dependence of the magnetic field produced by the gradient coils of an MRI scanner with sufficient accuracy to correct errors in quantitative diffusion MRI (DMRI) caused by gradient nonlinearity and gradient amplifier miscalibration. THEORY AND METHODS: The field produced by the gradient coils is expanded in regular solid harmonics. The expansion coefficients are found by fitting a model to a minimum set of diffusion‐weighted images of an isotropic diffusion phantom. The accuracy of the resulting gradient coil field maps is evaluated by using them to compute corrected b‐matrices that are then used to process a multi‐shell diffusion tensor imaging (DTI) dataset with 32 diffusion directions per shell. RESULTS: The method substantially reduces both the spatial inhomogeneity of the computed mean diffusivities (MD) and the computed values of the fractional anisotropy (FA), as well as virtually eliminating any artifactual directional bias in the tensor field secondary to gradient nonlinearity. When a small scaling miscalibration was purposely introduced in the x, y, and z, the method accurately detected the amount of miscalibration on each gradient axis. CONCLUSION: The method presented detects and corrects the effects of gradient nonlinearity and gradient gain miscalibration using a simple isotropic diffusion phantom. The correction would improve the accuracy of DMRI measurements in the brain and other organs for both DTI and higher order diffusion analysis. In particular, it would allow calibration of MRI systems, improving data harmony in multicenter studies. |
format | Online Article Text |
id | pubmed-8596767 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-85967672021-11-22 Mapping gradient nonlinearity and miscalibration using diffusion‐weighted MR images of a uniform isotropic phantom Barnett, Alan Seth Irfanoglu, M. Okan Landman, Bennett Rogers, Baxter Pierpaoli, Carlo Magn Reson Med Research Articles—Computer Processing and Modeling PURPOSE: To use diffusion measurements to map the spatial dependence of the magnetic field produced by the gradient coils of an MRI scanner with sufficient accuracy to correct errors in quantitative diffusion MRI (DMRI) caused by gradient nonlinearity and gradient amplifier miscalibration. THEORY AND METHODS: The field produced by the gradient coils is expanded in regular solid harmonics. The expansion coefficients are found by fitting a model to a minimum set of diffusion‐weighted images of an isotropic diffusion phantom. The accuracy of the resulting gradient coil field maps is evaluated by using them to compute corrected b‐matrices that are then used to process a multi‐shell diffusion tensor imaging (DTI) dataset with 32 diffusion directions per shell. RESULTS: The method substantially reduces both the spatial inhomogeneity of the computed mean diffusivities (MD) and the computed values of the fractional anisotropy (FA), as well as virtually eliminating any artifactual directional bias in the tensor field secondary to gradient nonlinearity. When a small scaling miscalibration was purposely introduced in the x, y, and z, the method accurately detected the amount of miscalibration on each gradient axis. CONCLUSION: The method presented detects and corrects the effects of gradient nonlinearity and gradient gain miscalibration using a simple isotropic diffusion phantom. The correction would improve the accuracy of DMRI measurements in the brain and other organs for both DTI and higher order diffusion analysis. In particular, it would allow calibration of MRI systems, improving data harmony in multicenter studies. John Wiley and Sons Inc. 2021-08-04 2021-12 /pmc/articles/PMC8596767/ /pubmed/34351007 http://dx.doi.org/10.1002/mrm.28890 Text en © 2021 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles—Computer Processing and Modeling Barnett, Alan Seth Irfanoglu, M. Okan Landman, Bennett Rogers, Baxter Pierpaoli, Carlo Mapping gradient nonlinearity and miscalibration using diffusion‐weighted MR images of a uniform isotropic phantom |
title | Mapping gradient nonlinearity and miscalibration using diffusion‐weighted MR images of a uniform isotropic phantom |
title_full | Mapping gradient nonlinearity and miscalibration using diffusion‐weighted MR images of a uniform isotropic phantom |
title_fullStr | Mapping gradient nonlinearity and miscalibration using diffusion‐weighted MR images of a uniform isotropic phantom |
title_full_unstemmed | Mapping gradient nonlinearity and miscalibration using diffusion‐weighted MR images of a uniform isotropic phantom |
title_short | Mapping gradient nonlinearity and miscalibration using diffusion‐weighted MR images of a uniform isotropic phantom |
title_sort | mapping gradient nonlinearity and miscalibration using diffusion‐weighted mr images of a uniform isotropic phantom |
topic | Research Articles—Computer Processing and Modeling |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8596767/ https://www.ncbi.nlm.nih.gov/pubmed/34351007 http://dx.doi.org/10.1002/mrm.28890 |
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