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Substrate induced generation of transient self-assembled catalytic systems

Living matter is sustained under non-equilibrium conditions via continuous expense of energy which is coordinated by complex organized events. Spatiotemporal control over exquisite functions arises from chemical complexity under non-equilibrium conditions. For instance, extant biology often uses sub...

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Autores principales: Afrose, Syed Pavel, Ghosh, Chandranath, Das, Dibyendu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8597835/
https://www.ncbi.nlm.nih.gov/pubmed/34820083
http://dx.doi.org/10.1039/d1sc03492h
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author Afrose, Syed Pavel
Ghosh, Chandranath
Das, Dibyendu
author_facet Afrose, Syed Pavel
Ghosh, Chandranath
Das, Dibyendu
author_sort Afrose, Syed Pavel
collection PubMed
description Living matter is sustained under non-equilibrium conditions via continuous expense of energy which is coordinated by complex organized events. Spatiotemporal control over exquisite functions arises from chemical complexity under non-equilibrium conditions. For instance, extant biology often uses substrate binding events to access temporally stable protein conformations which show acceleration of catalytic rates to subsequently degrade the substrate. Furthermore, thermodynamically activated but kinetically stable esters (GTP) induce the change of conformation of cytoskeleton proteins (microtubules) which leads to rapid polymerization and triggers an augmentation of catalytic rates to subsequently degrade the ester. Importantly, high-energy assemblies composed of non-activated building blocks (GDP-tubulin) are accessed utilizing the energy dissipated from the catalytic conversion of GTP to GDP from the assembled state. Notably, some experimental studies with simple self-assembled systems have elegantly mimicked the phenomena of substrate induced transient generation of catalytic conformations. Through this review, we endeavour to highlight those select studies which have used simple building blocks to demonstrate substrate induced self-assemblies that subsequently show rate acceleration to convert the substrate into waste. The concept of substrate induced self-assembly of building blocks and rate acceleration from the assembled state has the potential to play a predominant role in the preparation of non-equilibrium systems. The design strategies covered in this review can inspire the possibilities of accessing high energy self-assembled structures that are seen in living systems.
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spelling pubmed-85978352021-11-23 Substrate induced generation of transient self-assembled catalytic systems Afrose, Syed Pavel Ghosh, Chandranath Das, Dibyendu Chem Sci Chemistry Living matter is sustained under non-equilibrium conditions via continuous expense of energy which is coordinated by complex organized events. Spatiotemporal control over exquisite functions arises from chemical complexity under non-equilibrium conditions. For instance, extant biology often uses substrate binding events to access temporally stable protein conformations which show acceleration of catalytic rates to subsequently degrade the substrate. Furthermore, thermodynamically activated but kinetically stable esters (GTP) induce the change of conformation of cytoskeleton proteins (microtubules) which leads to rapid polymerization and triggers an augmentation of catalytic rates to subsequently degrade the ester. Importantly, high-energy assemblies composed of non-activated building blocks (GDP-tubulin) are accessed utilizing the energy dissipated from the catalytic conversion of GTP to GDP from the assembled state. Notably, some experimental studies with simple self-assembled systems have elegantly mimicked the phenomena of substrate induced transient generation of catalytic conformations. Through this review, we endeavour to highlight those select studies which have used simple building blocks to demonstrate substrate induced self-assemblies that subsequently show rate acceleration to convert the substrate into waste. The concept of substrate induced self-assembly of building blocks and rate acceleration from the assembled state has the potential to play a predominant role in the preparation of non-equilibrium systems. The design strategies covered in this review can inspire the possibilities of accessing high energy self-assembled structures that are seen in living systems. The Royal Society of Chemistry 2021-11-08 /pmc/articles/PMC8597835/ /pubmed/34820083 http://dx.doi.org/10.1039/d1sc03492h Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/
spellingShingle Chemistry
Afrose, Syed Pavel
Ghosh, Chandranath
Das, Dibyendu
Substrate induced generation of transient self-assembled catalytic systems
title Substrate induced generation of transient self-assembled catalytic systems
title_full Substrate induced generation of transient self-assembled catalytic systems
title_fullStr Substrate induced generation of transient self-assembled catalytic systems
title_full_unstemmed Substrate induced generation of transient self-assembled catalytic systems
title_short Substrate induced generation of transient self-assembled catalytic systems
title_sort substrate induced generation of transient self-assembled catalytic systems
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8597835/
https://www.ncbi.nlm.nih.gov/pubmed/34820083
http://dx.doi.org/10.1039/d1sc03492h
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