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Mathematical model and computational scheme for multi-phase modeling of cellular population and microenvironmental dynamics in soft tissue

In this paper we introduce a system of partial differential equations that is capable of modeling a variety of dynamic processes in soft tissue cellular populations and their microenvironments. The model is designed to be general enough to simulate such processes as tissue regeneration, tumor growth...

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Detalles Bibliográficos
Autores principales: Baramidze, Gregory, Baramidze, Victoria, Xu, Ying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8598064/
https://www.ncbi.nlm.nih.gov/pubmed/34788347
http://dx.doi.org/10.1371/journal.pone.0260108
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author Baramidze, Gregory
Baramidze, Victoria
Xu, Ying
author_facet Baramidze, Gregory
Baramidze, Victoria
Xu, Ying
author_sort Baramidze, Gregory
collection PubMed
description In this paper we introduce a system of partial differential equations that is capable of modeling a variety of dynamic processes in soft tissue cellular populations and their microenvironments. The model is designed to be general enough to simulate such processes as tissue regeneration, tumor growth, immune response, and many more. It also has built-in flexibility to include multiple chemical fields and/or sub-populations of cells, interstitial fluid and/or extracellular matrix. The model is derived from the conservation laws for mass and linear momentum and therefore can be classified as a continuum multi-phase model. A careful choice of state variables provides stability in solving the system of discretized equations defining advective flux terms. A concept of deviation from normal allows us to use simplified constitutive relations for stresses. We also present an algorithm for computing numerical approximations to the solutions of the system and discuss properties of these approximations. We demonstrate several examples of applications of the model. Numerical simulations show a significant potential of the model for simulating a variety of processes in soft tissues.
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spelling pubmed-85980642021-11-18 Mathematical model and computational scheme for multi-phase modeling of cellular population and microenvironmental dynamics in soft tissue Baramidze, Gregory Baramidze, Victoria Xu, Ying PLoS One Research Article In this paper we introduce a system of partial differential equations that is capable of modeling a variety of dynamic processes in soft tissue cellular populations and their microenvironments. The model is designed to be general enough to simulate such processes as tissue regeneration, tumor growth, immune response, and many more. It also has built-in flexibility to include multiple chemical fields and/or sub-populations of cells, interstitial fluid and/or extracellular matrix. The model is derived from the conservation laws for mass and linear momentum and therefore can be classified as a continuum multi-phase model. A careful choice of state variables provides stability in solving the system of discretized equations defining advective flux terms. A concept of deviation from normal allows us to use simplified constitutive relations for stresses. We also present an algorithm for computing numerical approximations to the solutions of the system and discuss properties of these approximations. We demonstrate several examples of applications of the model. Numerical simulations show a significant potential of the model for simulating a variety of processes in soft tissues. Public Library of Science 2021-11-17 /pmc/articles/PMC8598064/ /pubmed/34788347 http://dx.doi.org/10.1371/journal.pone.0260108 Text en © 2021 Baramidze et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Baramidze, Gregory
Baramidze, Victoria
Xu, Ying
Mathematical model and computational scheme for multi-phase modeling of cellular population and microenvironmental dynamics in soft tissue
title Mathematical model and computational scheme for multi-phase modeling of cellular population and microenvironmental dynamics in soft tissue
title_full Mathematical model and computational scheme for multi-phase modeling of cellular population and microenvironmental dynamics in soft tissue
title_fullStr Mathematical model and computational scheme for multi-phase modeling of cellular population and microenvironmental dynamics in soft tissue
title_full_unstemmed Mathematical model and computational scheme for multi-phase modeling of cellular population and microenvironmental dynamics in soft tissue
title_short Mathematical model and computational scheme for multi-phase modeling of cellular population and microenvironmental dynamics in soft tissue
title_sort mathematical model and computational scheme for multi-phase modeling of cellular population and microenvironmental dynamics in soft tissue
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8598064/
https://www.ncbi.nlm.nih.gov/pubmed/34788347
http://dx.doi.org/10.1371/journal.pone.0260108
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