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Natural language processing and machine learning to assist radiation oncology incident learning

PURPOSE: To develop a Natural Language Processing (NLP) and Machine Learning (ML) pipeline that can be integrated into an Incident Learning System (ILS) to assist radiation oncology incident learning by semi‐automating incident classification. Our goal was to develop ML models that can generate labe...

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Autores principales: Mathew, Felix, Wang, Hui, Montgomery, Logan, Kildea, John
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8598135/
https://www.ncbi.nlm.nih.gov/pubmed/34610206
http://dx.doi.org/10.1002/acm2.13437
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author Mathew, Felix
Wang, Hui
Montgomery, Logan
Kildea, John
author_facet Mathew, Felix
Wang, Hui
Montgomery, Logan
Kildea, John
author_sort Mathew, Felix
collection PubMed
description PURPOSE: To develop a Natural Language Processing (NLP) and Machine Learning (ML) pipeline that can be integrated into an Incident Learning System (ILS) to assist radiation oncology incident learning by semi‐automating incident classification. Our goal was to develop ML models that can generate label recommendations, arranged according to their likelihoods, for three data elements in Canadian NSIR‐RT taxonomy. METHODS: Over 6000 incident reports were gathered from the Canadian national ILS as well as our local ILS database. Incident descriptions from these reports were processed using various NLP techniques. The processed data with the expert‐generated labels were used to train and evaluate over 500 multi‐output ML algorithms. The top three models were identified and tuned for each of three different taxonomy data elements, namely: (1) process step where the incident occurred, (2) problem type of the incident and (3) the contributing factors of the incident. The best‐performing model after tuning was identified for each data element and tested on unseen data. RESULTS: The MultiOutputRegressor extended Linear SVR models performed best on the three data elements. On testing, our models ranked the most appropriate label 1.48 ± 0.03, 1.73 ± 0.05 and 2.66 ± 0.08 for process‐step, problem‐type and contributing factors respectively. CONCLUSIONS: We developed NLP‐ML models that can perform incident classification. These models will be integrated into our ILS to generate a drop‐down menu. This semi‐automated feature has the potential to improve the usability, accuracy and efficiency of our radiation oncology ILS.
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spelling pubmed-85981352021-12-02 Natural language processing and machine learning to assist radiation oncology incident learning Mathew, Felix Wang, Hui Montgomery, Logan Kildea, John J Appl Clin Med Phys Management and Profession PURPOSE: To develop a Natural Language Processing (NLP) and Machine Learning (ML) pipeline that can be integrated into an Incident Learning System (ILS) to assist radiation oncology incident learning by semi‐automating incident classification. Our goal was to develop ML models that can generate label recommendations, arranged according to their likelihoods, for three data elements in Canadian NSIR‐RT taxonomy. METHODS: Over 6000 incident reports were gathered from the Canadian national ILS as well as our local ILS database. Incident descriptions from these reports were processed using various NLP techniques. The processed data with the expert‐generated labels were used to train and evaluate over 500 multi‐output ML algorithms. The top three models were identified and tuned for each of three different taxonomy data elements, namely: (1) process step where the incident occurred, (2) problem type of the incident and (3) the contributing factors of the incident. The best‐performing model after tuning was identified for each data element and tested on unseen data. RESULTS: The MultiOutputRegressor extended Linear SVR models performed best on the three data elements. On testing, our models ranked the most appropriate label 1.48 ± 0.03, 1.73 ± 0.05 and 2.66 ± 0.08 for process‐step, problem‐type and contributing factors respectively. CONCLUSIONS: We developed NLP‐ML models that can perform incident classification. These models will be integrated into our ILS to generate a drop‐down menu. This semi‐automated feature has the potential to improve the usability, accuracy and efficiency of our radiation oncology ILS. John Wiley and Sons Inc. 2021-10-05 /pmc/articles/PMC8598135/ /pubmed/34610206 http://dx.doi.org/10.1002/acm2.13437 Text en © 2021 The Authors. Journal of Applied Clinical Medical Physics published by Wiley Periodicals, LLC on behalf of The American Association of Physicists in Medicine https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Management and Profession
Mathew, Felix
Wang, Hui
Montgomery, Logan
Kildea, John
Natural language processing and machine learning to assist radiation oncology incident learning
title Natural language processing and machine learning to assist radiation oncology incident learning
title_full Natural language processing and machine learning to assist radiation oncology incident learning
title_fullStr Natural language processing and machine learning to assist radiation oncology incident learning
title_full_unstemmed Natural language processing and machine learning to assist radiation oncology incident learning
title_short Natural language processing and machine learning to assist radiation oncology incident learning
title_sort natural language processing and machine learning to assist radiation oncology incident learning
topic Management and Profession
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8598135/
https://www.ncbi.nlm.nih.gov/pubmed/34610206
http://dx.doi.org/10.1002/acm2.13437
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