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Predicting energy and stability of known and hypothetical crystals using graph neural network
The discovery of new inorganic materials in unexplored chemical spaces necessitates calculating total energy quickly and with sufficient accuracy. Machine learning models that provide such a capability for both ground-state (GS) and higher-energy structures would be instrumental in accelerated scree...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8600245/ https://www.ncbi.nlm.nih.gov/pubmed/34820646 http://dx.doi.org/10.1016/j.patter.2021.100361 |
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author | Pandey, Shubham Qu, Jiaxing Stevanović, Vladan St. John, Peter Gorai, Prashun |
author_facet | Pandey, Shubham Qu, Jiaxing Stevanović, Vladan St. John, Peter Gorai, Prashun |
author_sort | Pandey, Shubham |
collection | PubMed |
description | The discovery of new inorganic materials in unexplored chemical spaces necessitates calculating total energy quickly and with sufficient accuracy. Machine learning models that provide such a capability for both ground-state (GS) and higher-energy structures would be instrumental in accelerated screening. Here, we demonstrate the importance of a balanced training dataset of GS and higher-energy structures to accurately predict total energies using a generic graph neural network architecture. Using [Formula: see text] 16,500 density functional theory calculations from the National Renewable Energy Laboratory (NREL) Materials Database and [Formula: see text] 11,000 calculations for hypothetical structures as our training database, we demonstrate that our model satisfactorily ranks the structures in the correct order of total energies for a given composition. Furthermore, we present a thorough error analysis to explain failure modes of the model, including both prediction outliers and occasional inconsistencies in the training data. By examining intermediate layers of the model, we analyze how the model represents learned structures and properties. |
format | Online Article Text |
id | pubmed-8600245 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-86002452021-11-23 Predicting energy and stability of known and hypothetical crystals using graph neural network Pandey, Shubham Qu, Jiaxing Stevanović, Vladan St. John, Peter Gorai, Prashun Patterns (N Y) Article The discovery of new inorganic materials in unexplored chemical spaces necessitates calculating total energy quickly and with sufficient accuracy. Machine learning models that provide such a capability for both ground-state (GS) and higher-energy structures would be instrumental in accelerated screening. Here, we demonstrate the importance of a balanced training dataset of GS and higher-energy structures to accurately predict total energies using a generic graph neural network architecture. Using [Formula: see text] 16,500 density functional theory calculations from the National Renewable Energy Laboratory (NREL) Materials Database and [Formula: see text] 11,000 calculations for hypothetical structures as our training database, we demonstrate that our model satisfactorily ranks the structures in the correct order of total energies for a given composition. Furthermore, we present a thorough error analysis to explain failure modes of the model, including both prediction outliers and occasional inconsistencies in the training data. By examining intermediate layers of the model, we analyze how the model represents learned structures and properties. Elsevier 2021-09-30 /pmc/articles/PMC8600245/ /pubmed/34820646 http://dx.doi.org/10.1016/j.patter.2021.100361 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Pandey, Shubham Qu, Jiaxing Stevanović, Vladan St. John, Peter Gorai, Prashun Predicting energy and stability of known and hypothetical crystals using graph neural network |
title | Predicting energy and stability of known and hypothetical crystals using graph neural network |
title_full | Predicting energy and stability of known and hypothetical crystals using graph neural network |
title_fullStr | Predicting energy and stability of known and hypothetical crystals using graph neural network |
title_full_unstemmed | Predicting energy and stability of known and hypothetical crystals using graph neural network |
title_short | Predicting energy and stability of known and hypothetical crystals using graph neural network |
title_sort | predicting energy and stability of known and hypothetical crystals using graph neural network |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8600245/ https://www.ncbi.nlm.nih.gov/pubmed/34820646 http://dx.doi.org/10.1016/j.patter.2021.100361 |
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