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Predicting energy and stability of known and hypothetical crystals using graph neural network

The discovery of new inorganic materials in unexplored chemical spaces necessitates calculating total energy quickly and with sufficient accuracy. Machine learning models that provide such a capability for both ground-state (GS) and higher-energy structures would be instrumental in accelerated scree...

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Autores principales: Pandey, Shubham, Qu, Jiaxing, Stevanović, Vladan, St. John, Peter, Gorai, Prashun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8600245/
https://www.ncbi.nlm.nih.gov/pubmed/34820646
http://dx.doi.org/10.1016/j.patter.2021.100361
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author Pandey, Shubham
Qu, Jiaxing
Stevanović, Vladan
St. John, Peter
Gorai, Prashun
author_facet Pandey, Shubham
Qu, Jiaxing
Stevanović, Vladan
St. John, Peter
Gorai, Prashun
author_sort Pandey, Shubham
collection PubMed
description The discovery of new inorganic materials in unexplored chemical spaces necessitates calculating total energy quickly and with sufficient accuracy. Machine learning models that provide such a capability for both ground-state (GS) and higher-energy structures would be instrumental in accelerated screening. Here, we demonstrate the importance of a balanced training dataset of GS and higher-energy structures to accurately predict total energies using a generic graph neural network architecture. Using [Formula: see text] 16,500 density functional theory calculations from the National Renewable Energy Laboratory (NREL) Materials Database and [Formula: see text] 11,000 calculations for hypothetical structures as our training database, we demonstrate that our model satisfactorily ranks the structures in the correct order of total energies for a given composition. Furthermore, we present a thorough error analysis to explain failure modes of the model, including both prediction outliers and occasional inconsistencies in the training data. By examining intermediate layers of the model, we analyze how the model represents learned structures and properties.
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spelling pubmed-86002452021-11-23 Predicting energy and stability of known and hypothetical crystals using graph neural network Pandey, Shubham Qu, Jiaxing Stevanović, Vladan St. John, Peter Gorai, Prashun Patterns (N Y) Article The discovery of new inorganic materials in unexplored chemical spaces necessitates calculating total energy quickly and with sufficient accuracy. Machine learning models that provide such a capability for both ground-state (GS) and higher-energy structures would be instrumental in accelerated screening. Here, we demonstrate the importance of a balanced training dataset of GS and higher-energy structures to accurately predict total energies using a generic graph neural network architecture. Using [Formula: see text] 16,500 density functional theory calculations from the National Renewable Energy Laboratory (NREL) Materials Database and [Formula: see text] 11,000 calculations for hypothetical structures as our training database, we demonstrate that our model satisfactorily ranks the structures in the correct order of total energies for a given composition. Furthermore, we present a thorough error analysis to explain failure modes of the model, including both prediction outliers and occasional inconsistencies in the training data. By examining intermediate layers of the model, we analyze how the model represents learned structures and properties. Elsevier 2021-09-30 /pmc/articles/PMC8600245/ /pubmed/34820646 http://dx.doi.org/10.1016/j.patter.2021.100361 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Pandey, Shubham
Qu, Jiaxing
Stevanović, Vladan
St. John, Peter
Gorai, Prashun
Predicting energy and stability of known and hypothetical crystals using graph neural network
title Predicting energy and stability of known and hypothetical crystals using graph neural network
title_full Predicting energy and stability of known and hypothetical crystals using graph neural network
title_fullStr Predicting energy and stability of known and hypothetical crystals using graph neural network
title_full_unstemmed Predicting energy and stability of known and hypothetical crystals using graph neural network
title_short Predicting energy and stability of known and hypothetical crystals using graph neural network
title_sort predicting energy and stability of known and hypothetical crystals using graph neural network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8600245/
https://www.ncbi.nlm.nih.gov/pubmed/34820646
http://dx.doi.org/10.1016/j.patter.2021.100361
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