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The global carrier frequency and genetic prevalence of Upshaw-Schulman syndrome
BACKGROUND: Upshaw–Schulman syndrome (USS) is an autosomal recessive disease characterized by thrombotic microangiopathies caused by pathogenic variants in ADAMTS13. We aimed to (1) curate the ADAMTS13 gene pathogenic variant dataset and (2) estimate the carrier frequency and genetic prevalence of U...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8600861/ https://www.ncbi.nlm.nih.gov/pubmed/34789164 http://dx.doi.org/10.1186/s12863-021-01010-0 |
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author | Zhao, Ting Fan, Shanghua Sun, Liu |
author_facet | Zhao, Ting Fan, Shanghua Sun, Liu |
author_sort | Zhao, Ting |
collection | PubMed |
description | BACKGROUND: Upshaw–Schulman syndrome (USS) is an autosomal recessive disease characterized by thrombotic microangiopathies caused by pathogenic variants in ADAMTS13. We aimed to (1) curate the ADAMTS13 gene pathogenic variant dataset and (2) estimate the carrier frequency and genetic prevalence of USS using Genome Aggregation Database (gnomAD) data. METHODS: Studies were comprehensively retrieved. All previously reported pathogenic ADAMTS13 variants were compiled and annotated with gnomAD allele frequencies. The pooled global and population-specific carrier frequencies and genetic prevalence of USS were calculated using the Hardy-Weinberg equation. RESULTS: We mined reported disease-causing variants that were present in the gnomAD v2.1.1, filtered by allele frequency. The pathogenicity of variants was classified according to the American College of Medical Genetics and Genomics criteria. The genetic prevalence and carrier frequency of USS were 0.43 per 1 million (95% CI: [0.36, 0.55]) and 1.31 per 1 thousand population, respectively. When the novel pathogenic/likely pathogenic variants were included, the genetic prevalence and carrier frequency were 1.1 per 1 million (95% CI: [0.89, 1.37]) and 2.1 per 1 thousand population, respectively. CONCLUSIONS: The genetic prevalence and carrier frequency of USS were within the ranges of previous estimates. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12863-021-01010-0. |
format | Online Article Text |
id | pubmed-8600861 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-86008612021-11-19 The global carrier frequency and genetic prevalence of Upshaw-Schulman syndrome Zhao, Ting Fan, Shanghua Sun, Liu BMC Genom Data Research BACKGROUND: Upshaw–Schulman syndrome (USS) is an autosomal recessive disease characterized by thrombotic microangiopathies caused by pathogenic variants in ADAMTS13. We aimed to (1) curate the ADAMTS13 gene pathogenic variant dataset and (2) estimate the carrier frequency and genetic prevalence of USS using Genome Aggregation Database (gnomAD) data. METHODS: Studies were comprehensively retrieved. All previously reported pathogenic ADAMTS13 variants were compiled and annotated with gnomAD allele frequencies. The pooled global and population-specific carrier frequencies and genetic prevalence of USS were calculated using the Hardy-Weinberg equation. RESULTS: We mined reported disease-causing variants that were present in the gnomAD v2.1.1, filtered by allele frequency. The pathogenicity of variants was classified according to the American College of Medical Genetics and Genomics criteria. The genetic prevalence and carrier frequency of USS were 0.43 per 1 million (95% CI: [0.36, 0.55]) and 1.31 per 1 thousand population, respectively. When the novel pathogenic/likely pathogenic variants were included, the genetic prevalence and carrier frequency were 1.1 per 1 million (95% CI: [0.89, 1.37]) and 2.1 per 1 thousand population, respectively. CONCLUSIONS: The genetic prevalence and carrier frequency of USS were within the ranges of previous estimates. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12863-021-01010-0. BioMed Central 2021-11-17 /pmc/articles/PMC8600861/ /pubmed/34789164 http://dx.doi.org/10.1186/s12863-021-01010-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Zhao, Ting Fan, Shanghua Sun, Liu The global carrier frequency and genetic prevalence of Upshaw-Schulman syndrome |
title | The global carrier frequency and genetic prevalence of Upshaw-Schulman syndrome |
title_full | The global carrier frequency and genetic prevalence of Upshaw-Schulman syndrome |
title_fullStr | The global carrier frequency and genetic prevalence of Upshaw-Schulman syndrome |
title_full_unstemmed | The global carrier frequency and genetic prevalence of Upshaw-Schulman syndrome |
title_short | The global carrier frequency and genetic prevalence of Upshaw-Schulman syndrome |
title_sort | global carrier frequency and genetic prevalence of upshaw-schulman syndrome |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8600861/ https://www.ncbi.nlm.nih.gov/pubmed/34789164 http://dx.doi.org/10.1186/s12863-021-01010-0 |
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