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Prediction of in-hospital mortality of Clostriodiodes difficile infection using critical care database: a big data-driven, machine learning approach

RESEARCH OBJECTIVES: Clostriodiodes difficile infection (CDI) is a major cause of healthcare-associated diarrhoea with high mortality. There is a lack of validated predictors for severe outcomes in CDI. The aim of this study is to derive and validate a clinical prediction tool for CDI in-hospital mo...

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Autores principales: Du, Hao, Siah, Kewin Tien Ho, Ru-Yan, Valencia Zhang, Teh, Readon, En Tan, Christopher Yu, Yeung, Wesley, Scaduto, Christina, Bolongaita, Sarah, Cruz, Maria Teresa Kasunuran, Liu, Mengru, Lin, Xiaohao, Tan, Yan Yuan, Feng, Mengling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BMJ Publishing Group 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8601086/
https://www.ncbi.nlm.nih.gov/pubmed/34789472
http://dx.doi.org/10.1136/bmjgast-2021-000761
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author Du, Hao
Siah, Kewin Tien Ho
Ru-Yan, Valencia Zhang
Teh, Readon
En Tan, Christopher Yu
Yeung, Wesley
Scaduto, Christina
Bolongaita, Sarah
Cruz, Maria Teresa Kasunuran
Liu, Mengru
Lin, Xiaohao
Tan, Yan Yuan
Feng, Mengling
author_facet Du, Hao
Siah, Kewin Tien Ho
Ru-Yan, Valencia Zhang
Teh, Readon
En Tan, Christopher Yu
Yeung, Wesley
Scaduto, Christina
Bolongaita, Sarah
Cruz, Maria Teresa Kasunuran
Liu, Mengru
Lin, Xiaohao
Tan, Yan Yuan
Feng, Mengling
author_sort Du, Hao
collection PubMed
description RESEARCH OBJECTIVES: Clostriodiodes difficile infection (CDI) is a major cause of healthcare-associated diarrhoea with high mortality. There is a lack of validated predictors for severe outcomes in CDI. The aim of this study is to derive and validate a clinical prediction tool for CDI in-hospital mortality using a large critical care database. METHODOLOGY: The demographics, clinical parameters, laboratory results and mortality of CDI were extracted from the Medical Information Mart for Intensive Care-III (MIMIC-III) database. We subsequently trained three machine learning models: logistic regression (LR), random forest (RF) and gradient boosting machine (GBM) to predict in-hospital mortality. The individual performances of the models were compared against current severity scores (Clostridiodes difficile Associated Risk of Death Score (CARDS) and ATLAS (Age, Treatment with systemic antibiotics, leukocyte count, Albumin and Serum creatinine as a measure of renal function) by calculating area under receiver operating curve (AUROC). We identified factors associated with higher mortality risk in each model. SUMMARY OF RESULTS: From 61 532 intensive care unit stays in the MIMIC-III database, there were 1315 CDI cases. The mortality rate for CDI in the study cohort was 18.33%. AUROC was 0.69 (95% CI, 0.60 to 0.76) for LR, 0.71 (95% CI, 0.62 to 0.77) for RF and 0.72 (95% CI, 0.64 to 0.78) for GBM, while previously AUROC was 0.57 (95% CI, 0.51 to 0.65) for CARDS and 0.63 (95% CI, 0.54 to 0.70) for ATLAS. Albumin, lactate and bicarbonate were significant mortality factors for all the models. Free calcium, potassium, white blood cell, urea, platelet and mean blood pressure were present in at least two of the three models. CONCLUSION: Our machine learning derived CDI in-hospital mortality prediction model identified pertinent factors that can assist critical care clinicians in identifying patients at high risk of dying from CDI.
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spelling pubmed-86010862021-12-02 Prediction of in-hospital mortality of Clostriodiodes difficile infection using critical care database: a big data-driven, machine learning approach Du, Hao Siah, Kewin Tien Ho Ru-Yan, Valencia Zhang Teh, Readon En Tan, Christopher Yu Yeung, Wesley Scaduto, Christina Bolongaita, Sarah Cruz, Maria Teresa Kasunuran Liu, Mengru Lin, Xiaohao Tan, Yan Yuan Feng, Mengling BMJ Open Gastroenterol Gastrointestinal Infection RESEARCH OBJECTIVES: Clostriodiodes difficile infection (CDI) is a major cause of healthcare-associated diarrhoea with high mortality. There is a lack of validated predictors for severe outcomes in CDI. The aim of this study is to derive and validate a clinical prediction tool for CDI in-hospital mortality using a large critical care database. METHODOLOGY: The demographics, clinical parameters, laboratory results and mortality of CDI were extracted from the Medical Information Mart for Intensive Care-III (MIMIC-III) database. We subsequently trained three machine learning models: logistic regression (LR), random forest (RF) and gradient boosting machine (GBM) to predict in-hospital mortality. The individual performances of the models were compared against current severity scores (Clostridiodes difficile Associated Risk of Death Score (CARDS) and ATLAS (Age, Treatment with systemic antibiotics, leukocyte count, Albumin and Serum creatinine as a measure of renal function) by calculating area under receiver operating curve (AUROC). We identified factors associated with higher mortality risk in each model. SUMMARY OF RESULTS: From 61 532 intensive care unit stays in the MIMIC-III database, there were 1315 CDI cases. The mortality rate for CDI in the study cohort was 18.33%. AUROC was 0.69 (95% CI, 0.60 to 0.76) for LR, 0.71 (95% CI, 0.62 to 0.77) for RF and 0.72 (95% CI, 0.64 to 0.78) for GBM, while previously AUROC was 0.57 (95% CI, 0.51 to 0.65) for CARDS and 0.63 (95% CI, 0.54 to 0.70) for ATLAS. Albumin, lactate and bicarbonate were significant mortality factors for all the models. Free calcium, potassium, white blood cell, urea, platelet and mean blood pressure were present in at least two of the three models. CONCLUSION: Our machine learning derived CDI in-hospital mortality prediction model identified pertinent factors that can assist critical care clinicians in identifying patients at high risk of dying from CDI. BMJ Publishing Group 2021-11-17 /pmc/articles/PMC8601086/ /pubmed/34789472 http://dx.doi.org/10.1136/bmjgast-2021-000761 Text en © Author(s) (or their employer(s)) 2021. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) .
spellingShingle Gastrointestinal Infection
Du, Hao
Siah, Kewin Tien Ho
Ru-Yan, Valencia Zhang
Teh, Readon
En Tan, Christopher Yu
Yeung, Wesley
Scaduto, Christina
Bolongaita, Sarah
Cruz, Maria Teresa Kasunuran
Liu, Mengru
Lin, Xiaohao
Tan, Yan Yuan
Feng, Mengling
Prediction of in-hospital mortality of Clostriodiodes difficile infection using critical care database: a big data-driven, machine learning approach
title Prediction of in-hospital mortality of Clostriodiodes difficile infection using critical care database: a big data-driven, machine learning approach
title_full Prediction of in-hospital mortality of Clostriodiodes difficile infection using critical care database: a big data-driven, machine learning approach
title_fullStr Prediction of in-hospital mortality of Clostriodiodes difficile infection using critical care database: a big data-driven, machine learning approach
title_full_unstemmed Prediction of in-hospital mortality of Clostriodiodes difficile infection using critical care database: a big data-driven, machine learning approach
title_short Prediction of in-hospital mortality of Clostriodiodes difficile infection using critical care database: a big data-driven, machine learning approach
title_sort prediction of in-hospital mortality of clostriodiodes difficile infection using critical care database: a big data-driven, machine learning approach
topic Gastrointestinal Infection
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8601086/
https://www.ncbi.nlm.nih.gov/pubmed/34789472
http://dx.doi.org/10.1136/bmjgast-2021-000761
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