Cargando…

Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates

The throwaway culture related to the single‐use materials such as polyethylene terephthalate (PET) has created a major environmental concern. Recycling of PET waste into biodegradable plastic polyhydroxyalkanoate (PHA) creates an opportunity to improve resource efficiency and contribute to a circula...

Descripción completa

Detalles Bibliográficos
Autores principales: Narancic, Tanja, Salvador, Manuel, Hughes, Graham M., Beagan, Niall, Abdulmutalib, Umar, Kenny, Shane T., Wu, Huihai, Saccomanno, Marta, Um, Jounghyun, O'Connor, Kevin E., Jiménez, José I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8601165/
https://www.ncbi.nlm.nih.gov/pubmed/33404203
http://dx.doi.org/10.1111/1751-7915.13712
_version_ 1784601286075744256
author Narancic, Tanja
Salvador, Manuel
Hughes, Graham M.
Beagan, Niall
Abdulmutalib, Umar
Kenny, Shane T.
Wu, Huihai
Saccomanno, Marta
Um, Jounghyun
O'Connor, Kevin E.
Jiménez, José I.
author_facet Narancic, Tanja
Salvador, Manuel
Hughes, Graham M.
Beagan, Niall
Abdulmutalib, Umar
Kenny, Shane T.
Wu, Huihai
Saccomanno, Marta
Um, Jounghyun
O'Connor, Kevin E.
Jiménez, José I.
author_sort Narancic, Tanja
collection PubMed
description The throwaway culture related to the single‐use materials such as polyethylene terephthalate (PET) has created a major environmental concern. Recycling of PET waste into biodegradable plastic polyhydroxyalkanoate (PHA) creates an opportunity to improve resource efficiency and contribute to a circular economy. We sequenced the genome of Pseudomonas umsongensis GO16 previously shown to convert PET‐derived terephthalic acid (TA) into PHA and performed an in‐depth genome analysis. GO16 can degrade a range of aromatic substrates in addition to TA, due to the presence of a catabolic plasmid pENK22. The genetic complement required for the degradation of TA via protocatechuate was identified and its functionality was confirmed by transferring the tph operon into Pseudomonas putida KT2440, which is unable to utilize TA naturally. We also identified the genes involved in ethylene glycol (EG) metabolism, the second PET monomer, and validated the capacity of GO16 to use EG as a sole source of carbon and energy. Moreover, GO16 possesses genes for the synthesis of both medium and short chain length PHA and we have demonstrated the capacity of the strain to convert mixed TA and EG into PHA. The metabolic versatility of GO16 highlights the potential of this organism for biotransformations using PET waste as a feedstock.
format Online
Article
Text
id pubmed-8601165
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-86011652021-11-24 Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates Narancic, Tanja Salvador, Manuel Hughes, Graham M. Beagan, Niall Abdulmutalib, Umar Kenny, Shane T. Wu, Huihai Saccomanno, Marta Um, Jounghyun O'Connor, Kevin E. Jiménez, José I. Microb Biotechnol Research Articles The throwaway culture related to the single‐use materials such as polyethylene terephthalate (PET) has created a major environmental concern. Recycling of PET waste into biodegradable plastic polyhydroxyalkanoate (PHA) creates an opportunity to improve resource efficiency and contribute to a circular economy. We sequenced the genome of Pseudomonas umsongensis GO16 previously shown to convert PET‐derived terephthalic acid (TA) into PHA and performed an in‐depth genome analysis. GO16 can degrade a range of aromatic substrates in addition to TA, due to the presence of a catabolic plasmid pENK22. The genetic complement required for the degradation of TA via protocatechuate was identified and its functionality was confirmed by transferring the tph operon into Pseudomonas putida KT2440, which is unable to utilize TA naturally. We also identified the genes involved in ethylene glycol (EG) metabolism, the second PET monomer, and validated the capacity of GO16 to use EG as a sole source of carbon and energy. Moreover, GO16 possesses genes for the synthesis of both medium and short chain length PHA and we have demonstrated the capacity of the strain to convert mixed TA and EG into PHA. The metabolic versatility of GO16 highlights the potential of this organism for biotransformations using PET waste as a feedstock. John Wiley and Sons Inc. 2021-01-06 /pmc/articles/PMC8601165/ /pubmed/33404203 http://dx.doi.org/10.1111/1751-7915.13712 Text en © 2021 The Authors. Microbial Biotechnology published by Society for Applied Microbiology and John Wiley & Sons Ltd https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Narancic, Tanja
Salvador, Manuel
Hughes, Graham M.
Beagan, Niall
Abdulmutalib, Umar
Kenny, Shane T.
Wu, Huihai
Saccomanno, Marta
Um, Jounghyun
O'Connor, Kevin E.
Jiménez, José I.
Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates
title Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates
title_full Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates
title_fullStr Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates
title_full_unstemmed Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates
title_short Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates
title_sort genome analysis of the metabolically versatile pseudomonas umsongensis go16: the genetic basis for pet monomer upcycling into polyhydroxyalkanoates
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8601165/
https://www.ncbi.nlm.nih.gov/pubmed/33404203
http://dx.doi.org/10.1111/1751-7915.13712
work_keys_str_mv AT narancictanja genomeanalysisofthemetabolicallyversatilepseudomonasumsongensisgo16thegeneticbasisforpetmonomerupcyclingintopolyhydroxyalkanoates
AT salvadormanuel genomeanalysisofthemetabolicallyversatilepseudomonasumsongensisgo16thegeneticbasisforpetmonomerupcyclingintopolyhydroxyalkanoates
AT hughesgrahamm genomeanalysisofthemetabolicallyversatilepseudomonasumsongensisgo16thegeneticbasisforpetmonomerupcyclingintopolyhydroxyalkanoates
AT beaganniall genomeanalysisofthemetabolicallyversatilepseudomonasumsongensisgo16thegeneticbasisforpetmonomerupcyclingintopolyhydroxyalkanoates
AT abdulmutalibumar genomeanalysisofthemetabolicallyversatilepseudomonasumsongensisgo16thegeneticbasisforpetmonomerupcyclingintopolyhydroxyalkanoates
AT kennyshanet genomeanalysisofthemetabolicallyversatilepseudomonasumsongensisgo16thegeneticbasisforpetmonomerupcyclingintopolyhydroxyalkanoates
AT wuhuihai genomeanalysisofthemetabolicallyversatilepseudomonasumsongensisgo16thegeneticbasisforpetmonomerupcyclingintopolyhydroxyalkanoates
AT saccomannomarta genomeanalysisofthemetabolicallyversatilepseudomonasumsongensisgo16thegeneticbasisforpetmonomerupcyclingintopolyhydroxyalkanoates
AT umjounghyun genomeanalysisofthemetabolicallyversatilepseudomonasumsongensisgo16thegeneticbasisforpetmonomerupcyclingintopolyhydroxyalkanoates
AT oconnorkevine genomeanalysisofthemetabolicallyversatilepseudomonasumsongensisgo16thegeneticbasisforpetmonomerupcyclingintopolyhydroxyalkanoates
AT jimenezjosei genomeanalysisofthemetabolicallyversatilepseudomonasumsongensisgo16thegeneticbasisforpetmonomerupcyclingintopolyhydroxyalkanoates