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A portable library of phosphate‐depletion based synthetic promoters for customable and automata control of gene expression in bacteria

Industrial biotechnology gene expression systems relay on constitutive promoters compromising cellular growth from the start of the bioprocess, or on inducible devices, which require manual addition of cognate inducers. To overcome this shortcoming, we engineered an automata regulatory system based...

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Detalles Bibliográficos
Autores principales: Torres‐Bacete, Jesús, Luís García, José, Nogales, Juan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8601176/
https://www.ncbi.nlm.nih.gov/pubmed/33783967
http://dx.doi.org/10.1111/1751-7915.13808
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author Torres‐Bacete, Jesús
Luís García, José
Nogales, Juan
author_facet Torres‐Bacete, Jesús
Luís García, José
Nogales, Juan
author_sort Torres‐Bacete, Jesús
collection PubMed
description Industrial biotechnology gene expression systems relay on constitutive promoters compromising cellular growth from the start of the bioprocess, or on inducible devices, which require manual addition of cognate inducers. To overcome this shortcoming, we engineered an automata regulatory system based on cell‐stress mechanisms. Specifically, we engineered a synthetic and highly portable phosphate‐depletion library of promoters inspired by bacterial PHO starvation system (Pliar promoters). Furthermore, we fully characterized 10 synthetic promoters within the background of two well‐known bacterial workhorses such as E. coli W and P. putida KT2440. The promoters displayed an interesting host‐dependent performance and a wide strength spectrum ranging from 0.4‐ to 1.3‐fold when compared to the wild‐type phosphatase alkaline promoter (PphoA). By comparing with available gene expression systems, we proved the suitability of this new library for the automata and effective decoupling of growth from production in P. putida. Growth phase‐dependent expression of these promoters could therefore be activated by fine tuning the initial concentration of phosphate in the medium. Finally, the Pliar library was implemented in the SEVA platform in a ready‐to‐use mode allowing its broad use by the scientific community.
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spelling pubmed-86011762021-11-24 A portable library of phosphate‐depletion based synthetic promoters for customable and automata control of gene expression in bacteria Torres‐Bacete, Jesús Luís García, José Nogales, Juan Microb Biotechnol Special Issue Articles Industrial biotechnology gene expression systems relay on constitutive promoters compromising cellular growth from the start of the bioprocess, or on inducible devices, which require manual addition of cognate inducers. To overcome this shortcoming, we engineered an automata regulatory system based on cell‐stress mechanisms. Specifically, we engineered a synthetic and highly portable phosphate‐depletion library of promoters inspired by bacterial PHO starvation system (Pliar promoters). Furthermore, we fully characterized 10 synthetic promoters within the background of two well‐known bacterial workhorses such as E. coli W and P. putida KT2440. The promoters displayed an interesting host‐dependent performance and a wide strength spectrum ranging from 0.4‐ to 1.3‐fold when compared to the wild‐type phosphatase alkaline promoter (PphoA). By comparing with available gene expression systems, we proved the suitability of this new library for the automata and effective decoupling of growth from production in P. putida. Growth phase‐dependent expression of these promoters could therefore be activated by fine tuning the initial concentration of phosphate in the medium. Finally, the Pliar library was implemented in the SEVA platform in a ready‐to‐use mode allowing its broad use by the scientific community. John Wiley and Sons Inc. 2021-03-30 /pmc/articles/PMC8601176/ /pubmed/33783967 http://dx.doi.org/10.1111/1751-7915.13808 Text en © 2021 The Authors. Microbial Biotechnology published by Society for Applied Microbiology and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Special Issue Articles
Torres‐Bacete, Jesús
Luís García, José
Nogales, Juan
A portable library of phosphate‐depletion based synthetic promoters for customable and automata control of gene expression in bacteria
title A portable library of phosphate‐depletion based synthetic promoters for customable and automata control of gene expression in bacteria
title_full A portable library of phosphate‐depletion based synthetic promoters for customable and automata control of gene expression in bacteria
title_fullStr A portable library of phosphate‐depletion based synthetic promoters for customable and automata control of gene expression in bacteria
title_full_unstemmed A portable library of phosphate‐depletion based synthetic promoters for customable and automata control of gene expression in bacteria
title_short A portable library of phosphate‐depletion based synthetic promoters for customable and automata control of gene expression in bacteria
title_sort portable library of phosphate‐depletion based synthetic promoters for customable and automata control of gene expression in bacteria
topic Special Issue Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8601176/
https://www.ncbi.nlm.nih.gov/pubmed/33783967
http://dx.doi.org/10.1111/1751-7915.13808
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