Cargando…

Whole-Genome Sequencing of SARS-CoV-2: Assessment of the Ion Torrent AmpliSeq Panel and Comparison with the Illumina MiSeq ARTIC Protocol

Fast and effective methods are needed for sequencing of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome to track genetic mutations and to identify new and emerging variants during the ongoing pandemic. The objectives were to assess the performance of the SARS-CoV-2 AmpliSeq r...

Descripción completa

Detalles Bibliográficos
Autores principales:	Plitnick, Jonathan, Griesemer, Sara, Lasek-Nesselquist, Erica, Singh, Navjot, Lamson, Daryl M., St. George, Kirsten
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2021
Materias:	Virology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8601232/ https://www.ncbi.nlm.nih.gov/pubmed/34550806 http://dx.doi.org/10.1128/JCM.00649-21

Ejemplares similares

Identification of Novel Mutations in Colorectal Cancer Patients Using AmpliSeq Comprehensive Cancer Panel
por: Almuzzaini, Bader, et al.
Publicado: (2021)

Simple and efficient germline copy number variant visualization method for the Ion AmpliSeq™ custom panel
por: Nishio, Shin‐ya, et al.
Publicado: (2018)

Evaluation of the Ion AmpliSeq SARS-CoV-2 Research Panel by Massive Parallel Sequencing
por: Alessandrini, Federica, et al.
Publicado: (2020)

Computational Functional Genomics-Based AmpliSeq™ Panel for Next-Generation Sequencing of Key Genes of Pain
por: Kringel, Dario, et al.
Publicado: (2021)

Next-generation sequencing of human opioid receptor genes based on a custom AmpliSeq™ library and ion torrent personal genome machine
por: Kringel, Dario, et al.
Publicado: (2016)

Two Novel Mutations Associated With Ataxia-Telangiectasia Identified Using an Ion AmpliSeq Inherited Disease Panel
por: Kuznetsova, Maria V., et al.
Publicado: (2017)

Development of an AmpliSeq(TM) Panel for Next-Generation Sequencing of a Set of Genetic Predictors of Persisting Pain
por: Kringel, Dario, et al.
Publicado: (2018)

Evaluation of the Performance of AmpliSeq and SureSelect Exome Sequencing Libraries for Ion Proton
por: Gampawar, Piyush, et al.
Publicado: (2019)

SNP analysis of challenging bone DNA samples using the HID-Ion AmpliSeq™ Identity Panel: facts and artefacts
por: Fattorini, Paolo, et al.
Publicado: (2023)

Evaluation of the Ion AmpliSeq™ PhenoTrivium Panel: MPS-Based Assay for Ancestry and Phenotype Predictions Challenged by Casework Samples
por: Diepenbroek, Marta, et al.
Publicado: (2020)

Determining Genotypic Drug Resistance by Ion Semiconductor Sequencing With the Ion AmpliSeq™ TB Panel in Multidrug-Resistant Mycobacterium tuberculosis Isolates
por: Park, Joonhong, et al.
Publicado: (2018)

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
por: Quail, Michael A, et al.
Publicado: (2012)

SARS-CoV-2 Genome Sequence from Morocco, Obtained Using Ion AmpliSeq Technology
por: Jouali, Farah, et al.
Publicado: (2020)

Malaria Molecular Surveillance in the Peruvian Amazon with a Novel Highly Multiplexed Plasmodium falciparum AmpliSeq Assay
por: Kattenberg, Johanna Helena, et al.
Publicado: (2023)

Validation of AmpliSeq NGS Panel for BRCA1 and BRCA2 Variant Detection in Canine Formalin-Fixed Paraffin-Embedded Mammary Tumors
por: Di Giacomo, Daniela, et al.
Publicado: (2022)

Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform
por: Wen, Chongqing, et al.
Publicado: (2017)

Detection of genetic mutations in patients with breast cancer from Saudi Arabia using Ion AmpliSeq™ Cancer Hotspot Panel v.2.0
por: Messaoudi, Safia A., et al.
Publicado: (2022)

AmpliSeq transcriptome analysis of human alveolar and monocyte-derived macrophages over time in response to Mycobacterium tuberculosis infection
por: Papp, Audrey C., et al.
Publicado: (2018)

Highly multiplexed AmpliSeq technology identifies novel variation of flowering time-related genes in soybean (Glycine max)
por: Ogiso-Tanaka, Eri, et al.
Publicado: (2019)

AmpliSeq Transcriptome of Laser Captured Neurons from Alzheimer Brain: Comparison of Single Cell Versus Neuron Pools
por: Deng, Wenjun, et al.
Publicado: (2019)

Application of a High-Throughput Targeted Sequence AmpliSeq Procedure to Assess the Presence and Variants of Virulence Genes in Salmonella
por: Gao, Ruimin, et al.
Publicado: (2022)

Molecular profiling of gene fusions in soft tissue sarcomas by Ion AmpliSeq(TM): a study of 35 cases
por: Wei, Rong, et al.
Publicado: (2022)

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
por: Caporaso, J Gregory, et al.
Publicado: (2012)

Illumina MiSeq sequencing analysis of fungal diversity in stored dates
por: Al-Bulushi, Ismail M., et al.
Publicado: (2017)

Perspectives of using Illumina MiSeq for identification of arbuscular mycorrhizal fungi
por: Kryukov, A.A., et al.
Publicado: (2020)

Novel highly-multiplexed AmpliSeq targeted assay for Plasmodium vivax genetic surveillance use cases at multiple geographical scales
por: Kattenberg, Johanna Helena, et al.
Publicado: (2022)

Comprehensive evaluation of AmpliSeq transcriptome, a novel targeted whole transcriptome RNA sequencing methodology for global gene expression analysis
por: Li, Wenli, et al.
Publicado: (2015)

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
por: Schirmer, Melanie, et al.
Publicado: (2015)

Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding
por: Nakao, Ryohei, et al.
Publicado: (2021)

Evaluation of a custom QIAseq targeted DNA panel with 164 ancestry informative markers sequenced with the Illumina MiSeq
por: Truelsen, D., et al.
Publicado: (2021)

Quasispecies Analyses of the HIV-1 Near-full-length Genome With Illumina MiSeq
por: Ode, Hirotaka, et al.
Publicado: (2015)

Illumina MiSeq sequencing disfavours a sequence motif in the GFP reporter gene
por: Van den Hoecke, Silvie, et al.
Publicado: (2016)

Qualitative and quantitative assessment of Illumina’s forensic STR and SNP kits on MiSeq FGx™
por: Sharma, Vishakha, et al.
Publicado: (2017)

Whole-Genome Sequencing of Porcine Epidemic Diarrhea Virus by Illumina MiSeq Platform
por: Wang, Leyi, et al.
Publicado: (2015)

Illumina MiSeq Analysis and Comparison of Freshwater Microalgal Communities on Ulleungdo and Dokdo Islands
por: YUN, HYUN-SIK, et al.
Publicado: (2019)

Next-generation sequencing of the human TRPV1 gene and the regulating co-players LTB4R and LTB4R2 based on a custom AmpliSeq(™) panel
por: Kringel, Dario, et al.
Publicado: (2017)

Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform
por: Shokralla, Shadi, et al.
Publicado: (2015)

Illumina MiSeq Sequencing for Preliminary Analysis of Microbiome Causing Primary Endodontic Infections in Egypt
por: Tawfik, Sally Ali, et al.
Publicado: (2018)

Assessment of seawater bacterial infection in rabbit tibia by Illumina MiSeq sequencing and bacterial culture
por: Wang, Du, et al.
Publicado: (2021)

Gut microbiome profiling of neonates using Nanopore MinION and Illumina MiSeq sequencing
por: Cha, Teahyen, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_uiil0u5805j6siffjhggh0m4eb