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The meaning of significant mean group differences for biomarker discovery
Over the past decade, biomarker discovery has become a key goal in psychiatry to aid in the more reliable diagnosis and prognosis of heterogeneous psychiatric conditions and the development of tailored therapies. Nevertheless, the prevailing statistical approach is still the mean group comparison be...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8601419/ https://www.ncbi.nlm.nih.gov/pubmed/34793435 http://dx.doi.org/10.1371/journal.pcbi.1009477 |
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author | Loth, Eva Ahmad, Jumana Chatham, Chris López, Beatriz Carter, Ben Crawley, Daisy Oakley, Bethany Hayward, Hannah Cooke, Jennifer San José Cáceres, Antonia Bzdok, Danilo Jones, Emily Charman, Tony Beckmann, Christian Bourgeron, Thomas Toro, Roberto Buitelaar, Jan Murphy, Declan Dumas, Guillaume |
author_facet | Loth, Eva Ahmad, Jumana Chatham, Chris López, Beatriz Carter, Ben Crawley, Daisy Oakley, Bethany Hayward, Hannah Cooke, Jennifer San José Cáceres, Antonia Bzdok, Danilo Jones, Emily Charman, Tony Beckmann, Christian Bourgeron, Thomas Toro, Roberto Buitelaar, Jan Murphy, Declan Dumas, Guillaume |
author_sort | Loth, Eva |
collection | PubMed |
description | Over the past decade, biomarker discovery has become a key goal in psychiatry to aid in the more reliable diagnosis and prognosis of heterogeneous psychiatric conditions and the development of tailored therapies. Nevertheless, the prevailing statistical approach is still the mean group comparison between “cases” and “controls,” which tends to ignore within-group variability. In this educational article, we used empirical data simulations to investigate how effect size, sample size, and the shape of distributions impact the interpretation of mean group differences for biomarker discovery. We then applied these statistical criteria to evaluate biomarker discovery in one area of psychiatric research—autism research. Across the most influential areas of autism research, effect size estimates ranged from small (d = 0.21, anatomical structure) to medium (d = 0.36 electrophysiology, d = 0.5, eye-tracking) to large (d = 1.1 theory of mind). We show that in normal distributions, this translates to approximately 45% to 63% of cases performing within 1 standard deviation (SD) of the typical range, i.e., they do not have a deficit/atypicality in a statistical sense. For a measure to have diagnostic utility as defined by 80% sensitivity and 80% specificity, Cohen’s d of 1.66 is required, with still 40% of cases falling within 1 SD. However, in both normal and nonnormal distributions, 1 (skewness) or 2 (platykurtic, bimodal) biologically plausible subgroups may exist despite small or even nonsignificant mean group differences. This conclusion drastically contrasts the way mean group differences are frequently reported. Over 95% of studies omitted the “on average” when summarising their findings in their abstracts (“autistic people have deficits in X”), which can be misleading as it implies that the group-level difference applies to all individuals in that group. We outline practical approaches and steps for researchers to explore mean group comparisons for the discovery of stratification biomarkers. |
format | Online Article Text |
id | pubmed-8601419 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-86014192021-11-19 The meaning of significant mean group differences for biomarker discovery Loth, Eva Ahmad, Jumana Chatham, Chris López, Beatriz Carter, Ben Crawley, Daisy Oakley, Bethany Hayward, Hannah Cooke, Jennifer San José Cáceres, Antonia Bzdok, Danilo Jones, Emily Charman, Tony Beckmann, Christian Bourgeron, Thomas Toro, Roberto Buitelaar, Jan Murphy, Declan Dumas, Guillaume PLoS Comput Biol Education Over the past decade, biomarker discovery has become a key goal in psychiatry to aid in the more reliable diagnosis and prognosis of heterogeneous psychiatric conditions and the development of tailored therapies. Nevertheless, the prevailing statistical approach is still the mean group comparison between “cases” and “controls,” which tends to ignore within-group variability. In this educational article, we used empirical data simulations to investigate how effect size, sample size, and the shape of distributions impact the interpretation of mean group differences for biomarker discovery. We then applied these statistical criteria to evaluate biomarker discovery in one area of psychiatric research—autism research. Across the most influential areas of autism research, effect size estimates ranged from small (d = 0.21, anatomical structure) to medium (d = 0.36 electrophysiology, d = 0.5, eye-tracking) to large (d = 1.1 theory of mind). We show that in normal distributions, this translates to approximately 45% to 63% of cases performing within 1 standard deviation (SD) of the typical range, i.e., they do not have a deficit/atypicality in a statistical sense. For a measure to have diagnostic utility as defined by 80% sensitivity and 80% specificity, Cohen’s d of 1.66 is required, with still 40% of cases falling within 1 SD. However, in both normal and nonnormal distributions, 1 (skewness) or 2 (platykurtic, bimodal) biologically plausible subgroups may exist despite small or even nonsignificant mean group differences. This conclusion drastically contrasts the way mean group differences are frequently reported. Over 95% of studies omitted the “on average” when summarising their findings in their abstracts (“autistic people have deficits in X”), which can be misleading as it implies that the group-level difference applies to all individuals in that group. We outline practical approaches and steps for researchers to explore mean group comparisons for the discovery of stratification biomarkers. Public Library of Science 2021-11-18 /pmc/articles/PMC8601419/ /pubmed/34793435 http://dx.doi.org/10.1371/journal.pcbi.1009477 Text en © 2021 Loth et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Education Loth, Eva Ahmad, Jumana Chatham, Chris López, Beatriz Carter, Ben Crawley, Daisy Oakley, Bethany Hayward, Hannah Cooke, Jennifer San José Cáceres, Antonia Bzdok, Danilo Jones, Emily Charman, Tony Beckmann, Christian Bourgeron, Thomas Toro, Roberto Buitelaar, Jan Murphy, Declan Dumas, Guillaume The meaning of significant mean group differences for biomarker discovery |
title | The meaning of significant mean group differences for biomarker discovery |
title_full | The meaning of significant mean group differences for biomarker discovery |
title_fullStr | The meaning of significant mean group differences for biomarker discovery |
title_full_unstemmed | The meaning of significant mean group differences for biomarker discovery |
title_short | The meaning of significant mean group differences for biomarker discovery |
title_sort | meaning of significant mean group differences for biomarker discovery |
topic | Education |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8601419/ https://www.ncbi.nlm.nih.gov/pubmed/34793435 http://dx.doi.org/10.1371/journal.pcbi.1009477 |
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