Cargando…

Integrated Strategy of UHPLC-Q-TOF-MS and Molecular Networking for Identification of Diterpenoids from Euphorbia fischeriana Steud. and Prediction of the Anti-Breast-Cancer Mechanism by the Network Pharmacological Method

Breast cancer is one of the most common malignancies in women worldwide. Traditional Chinese medicine has been used as adjunctive or complementary therapy for breast cancer. Diterpenoids from Euphorbia fischeriana Steud. have been demonstrated to possess anti-breast-cancer activity. This research wa...

Descripción completa

Detalles Bibliográficos
Autores principales: Ma, Tian-Cheng, Ma, Yu-Kun, Zhang, Jin-Ling, Liu, Lei, Sun, Jia, Guo, Li-Na, Liu, Qi, Sun, Yu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8601799/
https://www.ncbi.nlm.nih.gov/pubmed/34804177
http://dx.doi.org/10.1155/2021/3829434
_version_ 1784601426853363712
author Ma, Tian-Cheng
Ma, Yu-Kun
Zhang, Jin-Ling
Liu, Lei
Sun, Jia
Guo, Li-Na
Liu, Qi
Sun, Yu
author_facet Ma, Tian-Cheng
Ma, Yu-Kun
Zhang, Jin-Ling
Liu, Lei
Sun, Jia
Guo, Li-Na
Liu, Qi
Sun, Yu
author_sort Ma, Tian-Cheng
collection PubMed
description Breast cancer is one of the most common malignancies in women worldwide. Traditional Chinese medicine has been used as adjunctive or complementary therapy for breast cancer. Diterpenoids from Euphorbia fischeriana Steud. have been demonstrated to possess anti-breast-cancer activity. This research was aimed to systematically explore the diterpenoids from E. fischeriana and study the multiple mechanisms on breast cancer. The structures of diterpenoids were identified by the integrated strategy of UHPLC-Q-TOF-MS and molecular networking. A total of 177 diterpenoids belonging to 13 types were collected. In silico ADME analysis was performed on these compounds. It indicated that 130 of 177 diterpenoids completely adjusted to Lipinski's rule. The targets of compounds were obtained from PharmMapper. The targets of breast cancer were collected from GeneCards. Then, 197 compounds-related targets and 544 breast cancer-related targets were identified. After the intersection process, 58 overlapping targets between compounds-related targets and breast cancer-related targets were acquired. The STRING database was applied to predict the protein-protein interactions. The GO and KEGG pathway enrichment analysis were performed by using the KOBAS database. It indicated that these predicted pathways were closely related to breast cancer. The treatment effect of E. fischeriana on breast cancer might be performed through signaling pathways, such as IL-17 signaling pathway, MAPK signaling pathway, and PI3K-Akt signaling pathway. The predicted top genes such as EGFR, ESR, MAPK, SRC, CASP3, CDK2, and KDR were involved in cell proliferation, gene transcription, apoptosis, signal transduction, DNA damage and repair, tumor differentiation, metastasis, and cell cycle, which indicated that E. fischeriana might treat breast cancer comprehensively. A compounds-KEGG pathways-related targets network was built by using cytoHubba to analyze the hub compounds and targets. It concluded that E. fischeriana treated breast cancer not only by the main components but also by the microconstituents, which reflected the overall regulatory role of multicomponents treating breast cancer. To estimate the binding affinities, binding sites, and binding postures, molecular docking simulations between 177 diterpenoids and top 19 targets were carried out. The results are basically in line with expectations. In conclusion, these results can serve as references for researchers studying potential targets of diterpenoids from E. fischeriana on breast cancer in the future.
format Online
Article
Text
id pubmed-8601799
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-86017992021-11-19 Integrated Strategy of UHPLC-Q-TOF-MS and Molecular Networking for Identification of Diterpenoids from Euphorbia fischeriana Steud. and Prediction of the Anti-Breast-Cancer Mechanism by the Network Pharmacological Method Ma, Tian-Cheng Ma, Yu-Kun Zhang, Jin-Ling Liu, Lei Sun, Jia Guo, Li-Na Liu, Qi Sun, Yu Evid Based Complement Alternat Med Research Article Breast cancer is one of the most common malignancies in women worldwide. Traditional Chinese medicine has been used as adjunctive or complementary therapy for breast cancer. Diterpenoids from Euphorbia fischeriana Steud. have been demonstrated to possess anti-breast-cancer activity. This research was aimed to systematically explore the diterpenoids from E. fischeriana and study the multiple mechanisms on breast cancer. The structures of diterpenoids were identified by the integrated strategy of UHPLC-Q-TOF-MS and molecular networking. A total of 177 diterpenoids belonging to 13 types were collected. In silico ADME analysis was performed on these compounds. It indicated that 130 of 177 diterpenoids completely adjusted to Lipinski's rule. The targets of compounds were obtained from PharmMapper. The targets of breast cancer were collected from GeneCards. Then, 197 compounds-related targets and 544 breast cancer-related targets were identified. After the intersection process, 58 overlapping targets between compounds-related targets and breast cancer-related targets were acquired. The STRING database was applied to predict the protein-protein interactions. The GO and KEGG pathway enrichment analysis were performed by using the KOBAS database. It indicated that these predicted pathways were closely related to breast cancer. The treatment effect of E. fischeriana on breast cancer might be performed through signaling pathways, such as IL-17 signaling pathway, MAPK signaling pathway, and PI3K-Akt signaling pathway. The predicted top genes such as EGFR, ESR, MAPK, SRC, CASP3, CDK2, and KDR were involved in cell proliferation, gene transcription, apoptosis, signal transduction, DNA damage and repair, tumor differentiation, metastasis, and cell cycle, which indicated that E. fischeriana might treat breast cancer comprehensively. A compounds-KEGG pathways-related targets network was built by using cytoHubba to analyze the hub compounds and targets. It concluded that E. fischeriana treated breast cancer not only by the main components but also by the microconstituents, which reflected the overall regulatory role of multicomponents treating breast cancer. To estimate the binding affinities, binding sites, and binding postures, molecular docking simulations between 177 diterpenoids and top 19 targets were carried out. The results are basically in line with expectations. In conclusion, these results can serve as references for researchers studying potential targets of diterpenoids from E. fischeriana on breast cancer in the future. Hindawi 2021-11-11 /pmc/articles/PMC8601799/ /pubmed/34804177 http://dx.doi.org/10.1155/2021/3829434 Text en Copyright © 2021 Tian-Cheng Ma et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Ma, Tian-Cheng
Ma, Yu-Kun
Zhang, Jin-Ling
Liu, Lei
Sun, Jia
Guo, Li-Na
Liu, Qi
Sun, Yu
Integrated Strategy of UHPLC-Q-TOF-MS and Molecular Networking for Identification of Diterpenoids from Euphorbia fischeriana Steud. and Prediction of the Anti-Breast-Cancer Mechanism by the Network Pharmacological Method
title Integrated Strategy of UHPLC-Q-TOF-MS and Molecular Networking for Identification of Diterpenoids from Euphorbia fischeriana Steud. and Prediction of the Anti-Breast-Cancer Mechanism by the Network Pharmacological Method
title_full Integrated Strategy of UHPLC-Q-TOF-MS and Molecular Networking for Identification of Diterpenoids from Euphorbia fischeriana Steud. and Prediction of the Anti-Breast-Cancer Mechanism by the Network Pharmacological Method
title_fullStr Integrated Strategy of UHPLC-Q-TOF-MS and Molecular Networking for Identification of Diterpenoids from Euphorbia fischeriana Steud. and Prediction of the Anti-Breast-Cancer Mechanism by the Network Pharmacological Method
title_full_unstemmed Integrated Strategy of UHPLC-Q-TOF-MS and Molecular Networking for Identification of Diterpenoids from Euphorbia fischeriana Steud. and Prediction of the Anti-Breast-Cancer Mechanism by the Network Pharmacological Method
title_short Integrated Strategy of UHPLC-Q-TOF-MS and Molecular Networking for Identification of Diterpenoids from Euphorbia fischeriana Steud. and Prediction of the Anti-Breast-Cancer Mechanism by the Network Pharmacological Method
title_sort integrated strategy of uhplc-q-tof-ms and molecular networking for identification of diterpenoids from euphorbia fischeriana steud. and prediction of the anti-breast-cancer mechanism by the network pharmacological method
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8601799/
https://www.ncbi.nlm.nih.gov/pubmed/34804177
http://dx.doi.org/10.1155/2021/3829434
work_keys_str_mv AT matiancheng integratedstrategyofuhplcqtofmsandmolecularnetworkingforidentificationofditerpenoidsfromeuphorbiafischerianasteudandpredictionoftheantibreastcancermechanismbythenetworkpharmacologicalmethod
AT mayukun integratedstrategyofuhplcqtofmsandmolecularnetworkingforidentificationofditerpenoidsfromeuphorbiafischerianasteudandpredictionoftheantibreastcancermechanismbythenetworkpharmacologicalmethod
AT zhangjinling integratedstrategyofuhplcqtofmsandmolecularnetworkingforidentificationofditerpenoidsfromeuphorbiafischerianasteudandpredictionoftheantibreastcancermechanismbythenetworkpharmacologicalmethod
AT liulei integratedstrategyofuhplcqtofmsandmolecularnetworkingforidentificationofditerpenoidsfromeuphorbiafischerianasteudandpredictionoftheantibreastcancermechanismbythenetworkpharmacologicalmethod
AT sunjia integratedstrategyofuhplcqtofmsandmolecularnetworkingforidentificationofditerpenoidsfromeuphorbiafischerianasteudandpredictionoftheantibreastcancermechanismbythenetworkpharmacologicalmethod
AT guolina integratedstrategyofuhplcqtofmsandmolecularnetworkingforidentificationofditerpenoidsfromeuphorbiafischerianasteudandpredictionoftheantibreastcancermechanismbythenetworkpharmacologicalmethod
AT liuqi integratedstrategyofuhplcqtofmsandmolecularnetworkingforidentificationofditerpenoidsfromeuphorbiafischerianasteudandpredictionoftheantibreastcancermechanismbythenetworkpharmacologicalmethod
AT sunyu integratedstrategyofuhplcqtofmsandmolecularnetworkingforidentificationofditerpenoidsfromeuphorbiafischerianasteudandpredictionoftheantibreastcancermechanismbythenetworkpharmacologicalmethod