Cargando…

Comprehensive Analysis of m6A RNA Methylation Regulators and the Immune Microenvironment to Aid Immunotherapy in Pancreatic Cancer

Pancreatic cancer (PAAD) is one of the most malignant cancers and immune microenvironment has been proved to be involved in pathogenesis of PAAD. m6A modification, related to the expression of m6A regulators, participates in the development of multiple cancers. However, the correlation between m6A r...

Descripción completa

Detalles Bibliográficos
Autores principales: Guo, Yongdong, Wang, Ronglin, Li, Junqiang, Song, Yang, Min, Jie, Zhao, Ting, Hua, Lei, Shi, Jingjie, Zhang, Chao, Ma, Peixiang, Yang, Cheng, Zhu, Liaoliao, Gan, Dongxue, Li, Shanshan, Liu, Xiaonan, Su, Haichuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8602908/
https://www.ncbi.nlm.nih.gov/pubmed/34804059
http://dx.doi.org/10.3389/fimmu.2021.769425
_version_ 1784601662976950272
author Guo, Yongdong
Wang, Ronglin
Li, Junqiang
Song, Yang
Min, Jie
Zhao, Ting
Hua, Lei
Shi, Jingjie
Zhang, Chao
Ma, Peixiang
Yang, Cheng
Zhu, Liaoliao
Gan, Dongxue
Li, Shanshan
Liu, Xiaonan
Su, Haichuan
author_facet Guo, Yongdong
Wang, Ronglin
Li, Junqiang
Song, Yang
Min, Jie
Zhao, Ting
Hua, Lei
Shi, Jingjie
Zhang, Chao
Ma, Peixiang
Yang, Cheng
Zhu, Liaoliao
Gan, Dongxue
Li, Shanshan
Liu, Xiaonan
Su, Haichuan
author_sort Guo, Yongdong
collection PubMed
description Pancreatic cancer (PAAD) is one of the most malignant cancers and immune microenvironment has been proved to be involved in pathogenesis of PAAD. m6A modification, related to the expression of m6A regulators, participates in the development of multiple cancers. However, the correlation between m6A regulators and immune microenvironment was largely unknown in PAAD. And because of the small sample size of pancreatic cancer in the TCGA database, it is not enough to draw a convincing conclusion. In the present study, we downloaded seven pancreatic cancer datasets with survival data and removed batch effects among these datasets to be used as the PAAD cohort to analyze the immune landscape of PAAD and the expression pattern of m6A regulators and divided the integrated dataset into cluster 1 and cluster 2 by consensus clustering for m6A regulators. Lower m6A regulators were found to be related to higher immune cell infiltration and a better survival. Moreover, we identified six m6A regulators and constructed the prognostic signature of m6A regulators. Patients with low-risk score had a higher response to immune checkpoint inhibitor and a longer overall survival. To figure out the underlying mechanism, we analyzed the cancer immunity cycle, most altered genes, gene set enrichment analysis (GSEA) and gene set variation analysis (GSVA) in risk subtypes. In summary, the present study proved m6A regulators modulated the PAAD immune microenvironment. And risk scores served as predictive indicator for immunotherapy and played a prognostic role for PAAD patients. Our study provided novel therapeutic targets to improve immunotherapy efficacy.
format Online
Article
Text
id pubmed-8602908
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-86029082021-11-20 Comprehensive Analysis of m6A RNA Methylation Regulators and the Immune Microenvironment to Aid Immunotherapy in Pancreatic Cancer Guo, Yongdong Wang, Ronglin Li, Junqiang Song, Yang Min, Jie Zhao, Ting Hua, Lei Shi, Jingjie Zhang, Chao Ma, Peixiang Yang, Cheng Zhu, Liaoliao Gan, Dongxue Li, Shanshan Liu, Xiaonan Su, Haichuan Front Immunol Immunology Pancreatic cancer (PAAD) is one of the most malignant cancers and immune microenvironment has been proved to be involved in pathogenesis of PAAD. m6A modification, related to the expression of m6A regulators, participates in the development of multiple cancers. However, the correlation between m6A regulators and immune microenvironment was largely unknown in PAAD. And because of the small sample size of pancreatic cancer in the TCGA database, it is not enough to draw a convincing conclusion. In the present study, we downloaded seven pancreatic cancer datasets with survival data and removed batch effects among these datasets to be used as the PAAD cohort to analyze the immune landscape of PAAD and the expression pattern of m6A regulators and divided the integrated dataset into cluster 1 and cluster 2 by consensus clustering for m6A regulators. Lower m6A regulators were found to be related to higher immune cell infiltration and a better survival. Moreover, we identified six m6A regulators and constructed the prognostic signature of m6A regulators. Patients with low-risk score had a higher response to immune checkpoint inhibitor and a longer overall survival. To figure out the underlying mechanism, we analyzed the cancer immunity cycle, most altered genes, gene set enrichment analysis (GSEA) and gene set variation analysis (GSVA) in risk subtypes. In summary, the present study proved m6A regulators modulated the PAAD immune microenvironment. And risk scores served as predictive indicator for immunotherapy and played a prognostic role for PAAD patients. Our study provided novel therapeutic targets to improve immunotherapy efficacy. Frontiers Media S.A. 2021-11-05 /pmc/articles/PMC8602908/ /pubmed/34804059 http://dx.doi.org/10.3389/fimmu.2021.769425 Text en Copyright © 2021 Guo, Wang, Li, Song, Min, Zhao, Hua, Shi, Zhang, Ma, Yang, Zhu, Gan, Li, Liu and Su https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Guo, Yongdong
Wang, Ronglin
Li, Junqiang
Song, Yang
Min, Jie
Zhao, Ting
Hua, Lei
Shi, Jingjie
Zhang, Chao
Ma, Peixiang
Yang, Cheng
Zhu, Liaoliao
Gan, Dongxue
Li, Shanshan
Liu, Xiaonan
Su, Haichuan
Comprehensive Analysis of m6A RNA Methylation Regulators and the Immune Microenvironment to Aid Immunotherapy in Pancreatic Cancer
title Comprehensive Analysis of m6A RNA Methylation Regulators and the Immune Microenvironment to Aid Immunotherapy in Pancreatic Cancer
title_full Comprehensive Analysis of m6A RNA Methylation Regulators and the Immune Microenvironment to Aid Immunotherapy in Pancreatic Cancer
title_fullStr Comprehensive Analysis of m6A RNA Methylation Regulators and the Immune Microenvironment to Aid Immunotherapy in Pancreatic Cancer
title_full_unstemmed Comprehensive Analysis of m6A RNA Methylation Regulators and the Immune Microenvironment to Aid Immunotherapy in Pancreatic Cancer
title_short Comprehensive Analysis of m6A RNA Methylation Regulators and the Immune Microenvironment to Aid Immunotherapy in Pancreatic Cancer
title_sort comprehensive analysis of m6a rna methylation regulators and the immune microenvironment to aid immunotherapy in pancreatic cancer
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8602908/
https://www.ncbi.nlm.nih.gov/pubmed/34804059
http://dx.doi.org/10.3389/fimmu.2021.769425
work_keys_str_mv AT guoyongdong comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT wangronglin comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT lijunqiang comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT songyang comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT minjie comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT zhaoting comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT hualei comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT shijingjie comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT zhangchao comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT mapeixiang comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT yangcheng comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT zhuliaoliao comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT gandongxue comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT lishanshan comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT liuxiaonan comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer
AT suhaichuan comprehensiveanalysisofm6arnamethylationregulatorsandtheimmunemicroenvironmenttoaidimmunotherapyinpancreaticcancer