Cargando…

Full-view in vivo skin and blood vessels profile segmentation in photoacoustic imaging based on deep learning

Photoacoustic (PA) microscopy allows imaging of the soft biological tissue based on optical absorption contrast and spatial ultrasound resolution. One of the major applications of PA imaging is its characterization of microvasculature. However, the strong PA signal from skin layer overshadowed the s...

Descripción completa

Detalles Bibliográficos
Autores principales: Ly, Cao Duong, Nguyen, Van Tu, Vo, Tan Hung, Mondal, Sudip, Park, Sumin, Choi, Jaeyeop, Vu, Thi Thu Ha, Kim, Chang-Seok, Oh, Junghwan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8603312/
https://www.ncbi.nlm.nih.gov/pubmed/34824975
http://dx.doi.org/10.1016/j.pacs.2021.100310
_version_ 1784601744523657216
author Ly, Cao Duong
Nguyen, Van Tu
Vo, Tan Hung
Mondal, Sudip
Park, Sumin
Choi, Jaeyeop
Vu, Thi Thu Ha
Kim, Chang-Seok
Oh, Junghwan
author_facet Ly, Cao Duong
Nguyen, Van Tu
Vo, Tan Hung
Mondal, Sudip
Park, Sumin
Choi, Jaeyeop
Vu, Thi Thu Ha
Kim, Chang-Seok
Oh, Junghwan
author_sort Ly, Cao Duong
collection PubMed
description Photoacoustic (PA) microscopy allows imaging of the soft biological tissue based on optical absorption contrast and spatial ultrasound resolution. One of the major applications of PA imaging is its characterization of microvasculature. However, the strong PA signal from skin layer overshadowed the subcutaneous blood vessels leading to indirectly reconstruct the PA images in human study. Addressing the present situation, we examined a deep learning (DL) automatic algorithm to achieve high-resolution and high-contrast segmentation for widening PA imaging applications. In this research, we propose a DL model based on modified U-Net for extracting the relationship features between amplitudes of the generated PA signal from skin and underlying vessels. This study illustrates the broader potential of hybrid complex network as an automatic segmentation tool for the in vivo PA imaging. With DL-infused solution, our result outperforms the previous studies with achieved real-time semantic segmentation on large-size high-resolution PA images.
format Online
Article
Text
id pubmed-8603312
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-86033122021-11-24 Full-view in vivo skin and blood vessels profile segmentation in photoacoustic imaging based on deep learning Ly, Cao Duong Nguyen, Van Tu Vo, Tan Hung Mondal, Sudip Park, Sumin Choi, Jaeyeop Vu, Thi Thu Ha Kim, Chang-Seok Oh, Junghwan Photoacoustics Research Article Photoacoustic (PA) microscopy allows imaging of the soft biological tissue based on optical absorption contrast and spatial ultrasound resolution. One of the major applications of PA imaging is its characterization of microvasculature. However, the strong PA signal from skin layer overshadowed the subcutaneous blood vessels leading to indirectly reconstruct the PA images in human study. Addressing the present situation, we examined a deep learning (DL) automatic algorithm to achieve high-resolution and high-contrast segmentation for widening PA imaging applications. In this research, we propose a DL model based on modified U-Net for extracting the relationship features between amplitudes of the generated PA signal from skin and underlying vessels. This study illustrates the broader potential of hybrid complex network as an automatic segmentation tool for the in vivo PA imaging. With DL-infused solution, our result outperforms the previous studies with achieved real-time semantic segmentation on large-size high-resolution PA images. Elsevier 2021-10-20 /pmc/articles/PMC8603312/ /pubmed/34824975 http://dx.doi.org/10.1016/j.pacs.2021.100310 Text en © 2021 Published by Elsevier GmbH. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Ly, Cao Duong
Nguyen, Van Tu
Vo, Tan Hung
Mondal, Sudip
Park, Sumin
Choi, Jaeyeop
Vu, Thi Thu Ha
Kim, Chang-Seok
Oh, Junghwan
Full-view in vivo skin and blood vessels profile segmentation in photoacoustic imaging based on deep learning
title Full-view in vivo skin and blood vessels profile segmentation in photoacoustic imaging based on deep learning
title_full Full-view in vivo skin and blood vessels profile segmentation in photoacoustic imaging based on deep learning
title_fullStr Full-view in vivo skin and blood vessels profile segmentation in photoacoustic imaging based on deep learning
title_full_unstemmed Full-view in vivo skin and blood vessels profile segmentation in photoacoustic imaging based on deep learning
title_short Full-view in vivo skin and blood vessels profile segmentation in photoacoustic imaging based on deep learning
title_sort full-view in vivo skin and blood vessels profile segmentation in photoacoustic imaging based on deep learning
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8603312/
https://www.ncbi.nlm.nih.gov/pubmed/34824975
http://dx.doi.org/10.1016/j.pacs.2021.100310
work_keys_str_mv AT lycaoduong fullviewinvivoskinandbloodvesselsprofilesegmentationinphotoacousticimagingbasedondeeplearning
AT nguyenvantu fullviewinvivoskinandbloodvesselsprofilesegmentationinphotoacousticimagingbasedondeeplearning
AT votanhung fullviewinvivoskinandbloodvesselsprofilesegmentationinphotoacousticimagingbasedondeeplearning
AT mondalsudip fullviewinvivoskinandbloodvesselsprofilesegmentationinphotoacousticimagingbasedondeeplearning
AT parksumin fullviewinvivoskinandbloodvesselsprofilesegmentationinphotoacousticimagingbasedondeeplearning
AT choijaeyeop fullviewinvivoskinandbloodvesselsprofilesegmentationinphotoacousticimagingbasedondeeplearning
AT vuthithuha fullviewinvivoskinandbloodvesselsprofilesegmentationinphotoacousticimagingbasedondeeplearning
AT kimchangseok fullviewinvivoskinandbloodvesselsprofilesegmentationinphotoacousticimagingbasedondeeplearning
AT ohjunghwan fullviewinvivoskinandbloodvesselsprofilesegmentationinphotoacousticimagingbasedondeeplearning