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Roseomonas ponticola sp. nov., a novel bacterium isolated from Pearl River estuary
A novel species of the genus Roseomonas , designated SYSU M41301(T), was isolated from water sample of the Pearl River estuary in Guangdong, China. Polyphasic, taxonomic and phylogenomic analyses were used to determine the taxonomy position of the strain. Phylogenetic analysis using 16S rRNA gene se...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Microbiology Society
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8604164/ https://www.ncbi.nlm.nih.gov/pubmed/34623235 http://dx.doi.org/10.1099/ijsem.0.004994 |
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author | Yin, Ling-Zi Li, Jia-Ling Fang, Bao-Zhu Liu, Ze-Tao Wang, Pandeng Dong, Lei Duan, Li Luo, Xiao-Qing Li, Shan-Hui Li, Wen-Jun |
author_facet | Yin, Ling-Zi Li, Jia-Ling Fang, Bao-Zhu Liu, Ze-Tao Wang, Pandeng Dong, Lei Duan, Li Luo, Xiao-Qing Li, Shan-Hui Li, Wen-Jun |
author_sort | Yin, Ling-Zi |
collection | PubMed |
description | A novel species of the genus Roseomonas , designated SYSU M41301(T), was isolated from water sample of the Pearl River estuary in Guangdong, China. Polyphasic, taxonomic and phylogenomic analyses were used to determine the taxonomy position of the strain. Phylogenetic analysis using 16S rRNA gene sequence indicated that strain SYSU M41301(T) showed the highest sequence similarity to Roseomonas stagni KCTC 22213(T) (97.9 %) and Roseomonas riguiloci KCTC 23339(T) (96.4 %). The novel species could be differentiated from other species of the genus Roseomonas by its distinct phenotypic and genotypic characteristics. The isolate was Gram-staining-negative, aerobic, short rod-shape, oxidase-positive and non-motile. The predominant respiratory quinone was ubiquinone 8 (Q-8). The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, and one unidentified polar lipid. The major fatty acids (>10 % of total) were 11-methyl C(18 : 1) ω7c, summed feature 3 (C(16 : 1) ω7c and/ or C(16 : 1) ω6c) and summed feature 8 (C(18: :1) ω7c and/or C(18 : 1) ω6c). The G+C content of the novel isolate based on genomic DNA was 72.0 mol%. On the basis of phenotypic, genotypic and phylogenetic data, strain SYSU M41301(T) should be considered to represent a novel species in the genus Roseomonas, for which the name Roseomonas ponticola sp. nov. is proposed with the type strain SYSU M41301(T) (=KCTC 72726(T)=CGMCC 1.18613(T)). |
format | Online Article Text |
id | pubmed-8604164 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Microbiology Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-86041642021-11-22 Roseomonas ponticola sp. nov., a novel bacterium isolated from Pearl River estuary Yin, Ling-Zi Li, Jia-Ling Fang, Bao-Zhu Liu, Ze-Tao Wang, Pandeng Dong, Lei Duan, Li Luo, Xiao-Qing Li, Shan-Hui Li, Wen-Jun Int J Syst Evol Microbiol New Taxa A novel species of the genus Roseomonas , designated SYSU M41301(T), was isolated from water sample of the Pearl River estuary in Guangdong, China. Polyphasic, taxonomic and phylogenomic analyses were used to determine the taxonomy position of the strain. Phylogenetic analysis using 16S rRNA gene sequence indicated that strain SYSU M41301(T) showed the highest sequence similarity to Roseomonas stagni KCTC 22213(T) (97.9 %) and Roseomonas riguiloci KCTC 23339(T) (96.4 %). The novel species could be differentiated from other species of the genus Roseomonas by its distinct phenotypic and genotypic characteristics. The isolate was Gram-staining-negative, aerobic, short rod-shape, oxidase-positive and non-motile. The predominant respiratory quinone was ubiquinone 8 (Q-8). The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, and one unidentified polar lipid. The major fatty acids (>10 % of total) were 11-methyl C(18 : 1) ω7c, summed feature 3 (C(16 : 1) ω7c and/ or C(16 : 1) ω6c) and summed feature 8 (C(18: :1) ω7c and/or C(18 : 1) ω6c). The G+C content of the novel isolate based on genomic DNA was 72.0 mol%. On the basis of phenotypic, genotypic and phylogenetic data, strain SYSU M41301(T) should be considered to represent a novel species in the genus Roseomonas, for which the name Roseomonas ponticola sp. nov. is proposed with the type strain SYSU M41301(T) (=KCTC 72726(T)=CGMCC 1.18613(T)). Microbiology Society 2021-10-08 /pmc/articles/PMC8604164/ /pubmed/34623235 http://dx.doi.org/10.1099/ijsem.0.004994 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License. |
spellingShingle | New Taxa Yin, Ling-Zi Li, Jia-Ling Fang, Bao-Zhu Liu, Ze-Tao Wang, Pandeng Dong, Lei Duan, Li Luo, Xiao-Qing Li, Shan-Hui Li, Wen-Jun Roseomonas ponticola sp. nov., a novel bacterium isolated from Pearl River estuary |
title |
Roseomonas ponticola sp. nov., a novel bacterium isolated from Pearl River estuary |
title_full |
Roseomonas ponticola sp. nov., a novel bacterium isolated from Pearl River estuary |
title_fullStr |
Roseomonas ponticola sp. nov., a novel bacterium isolated from Pearl River estuary |
title_full_unstemmed |
Roseomonas ponticola sp. nov., a novel bacterium isolated from Pearl River estuary |
title_short |
Roseomonas ponticola sp. nov., a novel bacterium isolated from Pearl River estuary |
title_sort | roseomonas ponticola sp. nov., a novel bacterium isolated from pearl river estuary |
topic | New Taxa |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8604164/ https://www.ncbi.nlm.nih.gov/pubmed/34623235 http://dx.doi.org/10.1099/ijsem.0.004994 |
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