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Current strategies for detecting functional convergence across B-cell receptor repertoires

Convergence across B-cell receptor (BCR) and antibody repertoires has become instrumental in prioritizing candidates in recent rapid therapeutic antibody discovery campaigns. It has also increased our understanding of the immune system, providing evidence for the preferential selection of BCRs to pa...

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Autores principales: Raybould, Matthew I. J., Rees, Anthony R., Deane, Charlotte M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8604390/
https://www.ncbi.nlm.nih.gov/pubmed/34781829
http://dx.doi.org/10.1080/19420862.2021.1996732
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author Raybould, Matthew I. J.
Rees, Anthony R.
Deane, Charlotte M.
author_facet Raybould, Matthew I. J.
Rees, Anthony R.
Deane, Charlotte M.
author_sort Raybould, Matthew I. J.
collection PubMed
description Convergence across B-cell receptor (BCR) and antibody repertoires has become instrumental in prioritizing candidates in recent rapid therapeutic antibody discovery campaigns. It has also increased our understanding of the immune system, providing evidence for the preferential selection of BCRs to particular (immunodominant) epitopes post vaccination/infection. These important implications for both drug discovery and immunology mean that it is essential to consider the optimal way to combine experimental and computational technology when probing BCR repertoires for convergence signatures. Here, we discuss the theoretical basis for observing BCR repertoire functional convergence and explore factors of study design that can impact functional signal. We also review the computational arsenal available to detect antibodies with similar functional properties, highlighting opportunities enabled by recent clustering algorithms that exploit structural similarities between BCRs. Finally, we suggest future areas of development that should increase the power of BCR repertoire functional clustering.
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spelling pubmed-86043902021-11-20 Current strategies for detecting functional convergence across B-cell receptor repertoires Raybould, Matthew I. J. Rees, Anthony R. Deane, Charlotte M. MAbs Reviews Convergence across B-cell receptor (BCR) and antibody repertoires has become instrumental in prioritizing candidates in recent rapid therapeutic antibody discovery campaigns. It has also increased our understanding of the immune system, providing evidence for the preferential selection of BCRs to particular (immunodominant) epitopes post vaccination/infection. These important implications for both drug discovery and immunology mean that it is essential to consider the optimal way to combine experimental and computational technology when probing BCR repertoires for convergence signatures. Here, we discuss the theoretical basis for observing BCR repertoire functional convergence and explore factors of study design that can impact functional signal. We also review the computational arsenal available to detect antibodies with similar functional properties, highlighting opportunities enabled by recent clustering algorithms that exploit structural similarities between BCRs. Finally, we suggest future areas of development that should increase the power of BCR repertoire functional clustering. Taylor & Francis 2021-11-16 /pmc/articles/PMC8604390/ /pubmed/34781829 http://dx.doi.org/10.1080/19420862.2021.1996732 Text en © 2021 The Author(s). Published with license by Taylor & Francis Group, LLC. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Reviews
Raybould, Matthew I. J.
Rees, Anthony R.
Deane, Charlotte M.
Current strategies for detecting functional convergence across B-cell receptor repertoires
title Current strategies for detecting functional convergence across B-cell receptor repertoires
title_full Current strategies for detecting functional convergence across B-cell receptor repertoires
title_fullStr Current strategies for detecting functional convergence across B-cell receptor repertoires
title_full_unstemmed Current strategies for detecting functional convergence across B-cell receptor repertoires
title_short Current strategies for detecting functional convergence across B-cell receptor repertoires
title_sort current strategies for detecting functional convergence across b-cell receptor repertoires
topic Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8604390/
https://www.ncbi.nlm.nih.gov/pubmed/34781829
http://dx.doi.org/10.1080/19420862.2021.1996732
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