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The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae)
This is the first study to determine the complete mitochondrial genome of Sinocyclocheilus angularis, which is an endemic cavefish native to the Karst region of the Yunnan-Guizhou Plateau. The complete mitochondrial genome size of S. angularis was 16,586 bp, and it consisted of a control region, 13...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8604459/ https://www.ncbi.nlm.nih.gov/pubmed/34805522 http://dx.doi.org/10.1080/23802359.2021.1920862 |
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author | Luo, Qi Zhang, Renyi |
author_facet | Luo, Qi Zhang, Renyi |
author_sort | Luo, Qi |
collection | PubMed |
description | This is the first study to determine the complete mitochondrial genome of Sinocyclocheilus angularis, which is an endemic cavefish native to the Karst region of the Yunnan-Guizhou Plateau. The complete mitochondrial genome size of S. angularis was 16,586 bp, and it consisted of a control region, 13 protein-coding genes, 22 transfer RNA genes, and 2 ribosomal RNA genes. The base composition of the mitogenome was 25.14% A, 32.45% T, 27.10% G, and 15.31% C, with an overall GC content of 42.42%. Phylogenetic analysis revealed that all Sinocyclocheilus were clustered into one strong clade and S. angularis was very closely related to S. bicornutus. It will provide an essential genetic tool for the further evolutionary studies and conservation of genus Sinocyclocheilus. |
format | Online Article Text |
id | pubmed-8604459 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-86044592021-11-20 The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae) Luo, Qi Zhang, Renyi Mitochondrial DNA B Resour Mitogenome Announcement This is the first study to determine the complete mitochondrial genome of Sinocyclocheilus angularis, which is an endemic cavefish native to the Karst region of the Yunnan-Guizhou Plateau. The complete mitochondrial genome size of S. angularis was 16,586 bp, and it consisted of a control region, 13 protein-coding genes, 22 transfer RNA genes, and 2 ribosomal RNA genes. The base composition of the mitogenome was 25.14% A, 32.45% T, 27.10% G, and 15.31% C, with an overall GC content of 42.42%. Phylogenetic analysis revealed that all Sinocyclocheilus were clustered into one strong clade and S. angularis was very closely related to S. bicornutus. It will provide an essential genetic tool for the further evolutionary studies and conservation of genus Sinocyclocheilus. Taylor & Francis 2021-11-18 /pmc/articles/PMC8604459/ /pubmed/34805522 http://dx.doi.org/10.1080/23802359.2021.1920862 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Luo, Qi Zhang, Renyi The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae) |
title | The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae) |
title_full | The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae) |
title_fullStr | The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae) |
title_full_unstemmed | The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae) |
title_short | The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae) |
title_sort | complete mitochondrial genome and phylogenetic analysis of sinocyclocheilus angularis (cypriniformes: cyprinidae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8604459/ https://www.ncbi.nlm.nih.gov/pubmed/34805522 http://dx.doi.org/10.1080/23802359.2021.1920862 |
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