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The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae)

This is the first study to determine the complete mitochondrial genome of Sinocyclocheilus angularis, which is an endemic cavefish native to the Karst region of the Yunnan-Guizhou Plateau. The complete mitochondrial genome size of S. angularis was 16,586 bp, and it consisted of a control region, 13...

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Autores principales: Luo, Qi, Zhang, Renyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8604459/
https://www.ncbi.nlm.nih.gov/pubmed/34805522
http://dx.doi.org/10.1080/23802359.2021.1920862
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author Luo, Qi
Zhang, Renyi
author_facet Luo, Qi
Zhang, Renyi
author_sort Luo, Qi
collection PubMed
description This is the first study to determine the complete mitochondrial genome of Sinocyclocheilus angularis, which is an endemic cavefish native to the Karst region of the Yunnan-Guizhou Plateau. The complete mitochondrial genome size of S. angularis was 16,586 bp, and it consisted of a control region, 13 protein-coding genes, 22 transfer RNA genes, and 2 ribosomal RNA genes. The base composition of the mitogenome was 25.14% A, 32.45% T, 27.10% G, and 15.31% C, with an overall GC content of 42.42%. Phylogenetic analysis revealed that all Sinocyclocheilus were clustered into one strong clade and S. angularis was very closely related to S. bicornutus. It will provide an essential genetic tool for the further evolutionary studies and conservation of genus Sinocyclocheilus.
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spelling pubmed-86044592021-11-20 The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae) Luo, Qi Zhang, Renyi Mitochondrial DNA B Resour Mitogenome Announcement This is the first study to determine the complete mitochondrial genome of Sinocyclocheilus angularis, which is an endemic cavefish native to the Karst region of the Yunnan-Guizhou Plateau. The complete mitochondrial genome size of S. angularis was 16,586 bp, and it consisted of a control region, 13 protein-coding genes, 22 transfer RNA genes, and 2 ribosomal RNA genes. The base composition of the mitogenome was 25.14% A, 32.45% T, 27.10% G, and 15.31% C, with an overall GC content of 42.42%. Phylogenetic analysis revealed that all Sinocyclocheilus were clustered into one strong clade and S. angularis was very closely related to S. bicornutus. It will provide an essential genetic tool for the further evolutionary studies and conservation of genus Sinocyclocheilus. Taylor & Francis 2021-11-18 /pmc/articles/PMC8604459/ /pubmed/34805522 http://dx.doi.org/10.1080/23802359.2021.1920862 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Luo, Qi
Zhang, Renyi
The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae)
title The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae)
title_full The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae)
title_fullStr The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae)
title_full_unstemmed The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae)
title_short The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae)
title_sort complete mitochondrial genome and phylogenetic analysis of sinocyclocheilus angularis (cypriniformes: cyprinidae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8604459/
https://www.ncbi.nlm.nih.gov/pubmed/34805522
http://dx.doi.org/10.1080/23802359.2021.1920862
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