Characterization of the complete chloroplast genome of Quercus acrodonta (Fagaceae)

Quercus acrodonta Seemen is an East Asian evergreen oak tree species belonging to the Quercus section Ilex. Here, we assembled and annotated the complete chloroplast (cp) genome of the species. The circular genome is 161,105 bp in size, presenting a typical quadripartite structure including two copi...

Descripción completa

Detalles Bibliográficos
Autores principales: Li, Xuan, Li, Yongfu, El-Kassaby, Yousry A., Fang, Yanming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8604488/
https://www.ncbi.nlm.nih.gov/pubmed/34805512
http://dx.doi.org/10.1080/23802359.2021.1994893
_version_ 1784601973102739456
author Li, Xuan
Li, Yongfu
El-Kassaby, Yousry A.
Fang, Yanming
author_facet Li, Xuan
Li, Yongfu
El-Kassaby, Yousry A.
Fang, Yanming
author_sort Li, Xuan
collection PubMed
description Quercus acrodonta Seemen is an East Asian evergreen oak tree species belonging to the Quercus section Ilex. Here, we assembled and annotated the complete chloroplast (cp) genome of the species. The circular genome is 161,105 bp in size, presenting a typical quadripartite structure including two copies of inverted repeat (IR) regions (25,864 bp), one large single-copy (LSC) region (90,357 bp), and one small single-copy (SSC) region (19,020 bp). A total of 131 genes are encoded, including 85 protein-coding genes (PCGs), 38 tRNAs, and eight rRNAs. Phylogenetic analysis based on cp genome sequences of 18 Quercus species indicated that Q. acrodonta was more closely related to Q. phillyraeoides.
format Online
Article
Text
id pubmed-8604488
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-86044882021-11-20 Characterization of the complete chloroplast genome of Quercus acrodonta (Fagaceae) Li, Xuan Li, Yongfu El-Kassaby, Yousry A. Fang, Yanming Mitochondrial DNA B Resour Mitogenome Announcement Quercus acrodonta Seemen is an East Asian evergreen oak tree species belonging to the Quercus section Ilex. Here, we assembled and annotated the complete chloroplast (cp) genome of the species. The circular genome is 161,105 bp in size, presenting a typical quadripartite structure including two copies of inverted repeat (IR) regions (25,864 bp), one large single-copy (LSC) region (90,357 bp), and one small single-copy (SSC) region (19,020 bp). A total of 131 genes are encoded, including 85 protein-coding genes (PCGs), 38 tRNAs, and eight rRNAs. Phylogenetic analysis based on cp genome sequences of 18 Quercus species indicated that Q. acrodonta was more closely related to Q. phillyraeoides. Taylor & Francis 2021-11-17 /pmc/articles/PMC8604488/ /pubmed/34805512 http://dx.doi.org/10.1080/23802359.2021.1994893 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Li, Xuan
Li, Yongfu
El-Kassaby, Yousry A.
Fang, Yanming
Characterization of the complete chloroplast genome of Quercus acrodonta (Fagaceae)
title Characterization of the complete chloroplast genome of Quercus acrodonta (Fagaceae)
title_full Characterization of the complete chloroplast genome of Quercus acrodonta (Fagaceae)
title_fullStr Characterization of the complete chloroplast genome of Quercus acrodonta (Fagaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of Quercus acrodonta (Fagaceae)
title_short Characterization of the complete chloroplast genome of Quercus acrodonta (Fagaceae)
title_sort characterization of the complete chloroplast genome of quercus acrodonta (fagaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8604488/
https://www.ncbi.nlm.nih.gov/pubmed/34805512
http://dx.doi.org/10.1080/23802359.2021.1994893
work_keys_str_mv AT lixuan characterizationofthecompletechloroplastgenomeofquercusacrodontafagaceae
AT liyongfu characterizationofthecompletechloroplastgenomeofquercusacrodontafagaceae
AT elkassabyyousrya characterizationofthecompletechloroplastgenomeofquercusacrodontafagaceae
AT fangyanming characterizationofthecompletechloroplastgenomeofquercusacrodontafagaceae

Ejemplares similares