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Complete chloroplast genome of Dactylicapnos torulosa (Hook. & Thoms.) Hutch., a medicinal plant from southwest China and its phylogeny
Dactylicapnos torulosa (Hook. & Thoms.) Hutch. is a commonly used medicinal plant in southwest China. In this study, we sequenced the complete chloroplast genome of D. torulosa and explored phylogenetic relationship of the species and its related species. The genome size is 166,238 bp with typic...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8604533/ https://www.ncbi.nlm.nih.gov/pubmed/34805520 http://dx.doi.org/10.1080/23802359.2021.1999868 |
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author | Hu, Haisu Zhang, Dequan |
author_facet | Hu, Haisu Zhang, Dequan |
author_sort | Hu, Haisu |
collection | PubMed |
description | Dactylicapnos torulosa (Hook. & Thoms.) Hutch. is a commonly used medicinal plant in southwest China. In this study, we sequenced the complete chloroplast genome of D. torulosa and explored phylogenetic relationship of the species and its related species. The genome size is 166,238 bp with typical quadripartite structure. A pair of inverted repeats (IRs) of 37,115 bp are separated by a small single copy (SSC) region of 18,627 bp and a large single copy (LSC) region of 73,381 bp. In total, 107 genes are annotated, including 76 protein coding genes, 27 transport RNA, four ribosomal RNA. Moreover, 13 genes are found to contain introns. Phylogenetic analysis showed that Dactylicapnos torulosa formed a basal branch instead of gathering together with Corydalis, which was inconsistent with the traditional treatment on Fumarioideae. This study provides useful information for phylogeny and conservation of the species and its relatives. |
format | Online Article Text |
id | pubmed-8604533 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-86045332021-11-20 Complete chloroplast genome of Dactylicapnos torulosa (Hook. & Thoms.) Hutch., a medicinal plant from southwest China and its phylogeny Hu, Haisu Zhang, Dequan Mitochondrial DNA B Resour Mitogenome Announcement Dactylicapnos torulosa (Hook. & Thoms.) Hutch. is a commonly used medicinal plant in southwest China. In this study, we sequenced the complete chloroplast genome of D. torulosa and explored phylogenetic relationship of the species and its related species. The genome size is 166,238 bp with typical quadripartite structure. A pair of inverted repeats (IRs) of 37,115 bp are separated by a small single copy (SSC) region of 18,627 bp and a large single copy (LSC) region of 73,381 bp. In total, 107 genes are annotated, including 76 protein coding genes, 27 transport RNA, four ribosomal RNA. Moreover, 13 genes are found to contain introns. Phylogenetic analysis showed that Dactylicapnos torulosa formed a basal branch instead of gathering together with Corydalis, which was inconsistent with the traditional treatment on Fumarioideae. This study provides useful information for phylogeny and conservation of the species and its relatives. Taylor & Francis 2021-11-18 /pmc/articles/PMC8604533/ /pubmed/34805520 http://dx.doi.org/10.1080/23802359.2021.1999868 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Hu, Haisu Zhang, Dequan Complete chloroplast genome of Dactylicapnos torulosa (Hook. & Thoms.) Hutch., a medicinal plant from southwest China and its phylogeny |
title | Complete chloroplast genome of Dactylicapnos torulosa (Hook. & Thoms.) Hutch., a medicinal plant from southwest China and its phylogeny |
title_full | Complete chloroplast genome of Dactylicapnos torulosa (Hook. & Thoms.) Hutch., a medicinal plant from southwest China and its phylogeny |
title_fullStr | Complete chloroplast genome of Dactylicapnos torulosa (Hook. & Thoms.) Hutch., a medicinal plant from southwest China and its phylogeny |
title_full_unstemmed | Complete chloroplast genome of Dactylicapnos torulosa (Hook. & Thoms.) Hutch., a medicinal plant from southwest China and its phylogeny |
title_short | Complete chloroplast genome of Dactylicapnos torulosa (Hook. & Thoms.) Hutch., a medicinal plant from southwest China and its phylogeny |
title_sort | complete chloroplast genome of dactylicapnos torulosa (hook. & thoms.) hutch., a medicinal plant from southwest china and its phylogeny |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8604533/ https://www.ncbi.nlm.nih.gov/pubmed/34805520 http://dx.doi.org/10.1080/23802359.2021.1999868 |
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