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Establishing an internal quality control method for the stable extraction of nucleic acids of severe acute respiratory syndrome coronavirus 2 and RT‐PCR‐based detection

BACKGROUND: Severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2), the causative agent of the coronavirus disease 2019 (COVID‐19), is detected using real‐time RT‐PCR. However, there are limitations pertaining to quality control, particularly with respect to establishing quality control measur...

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Autores principales: Okuyama, Takahiro, Ohtsuka, Kouki, Ogura, Wataru, Yonetani, Shota, Yamasaki, Satoko, Miyagi, Hiroyuki, Sekiguchi, Kumiko, Ohnishi, Hiroaki, Watanabe, Takashi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8605113/
https://www.ncbi.nlm.nih.gov/pubmed/34599840
http://dx.doi.org/10.1002/jcla.23998
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author Okuyama, Takahiro
Ohtsuka, Kouki
Ogura, Wataru
Yonetani, Shota
Yamasaki, Satoko
Miyagi, Hiroyuki
Sekiguchi, Kumiko
Ohnishi, Hiroaki
Watanabe, Takashi
author_facet Okuyama, Takahiro
Ohtsuka, Kouki
Ogura, Wataru
Yonetani, Shota
Yamasaki, Satoko
Miyagi, Hiroyuki
Sekiguchi, Kumiko
Ohnishi, Hiroaki
Watanabe, Takashi
author_sort Okuyama, Takahiro
collection PubMed
description BACKGROUND: Severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2), the causative agent of the coronavirus disease 2019 (COVID‐19), is detected using real‐time RT‐PCR. However, there are limitations pertaining to quality control, particularly with respect to establishing quality control measures for extraction of viral nucleic acids. Here, we investigated the quality control measures for the various processes using an extrinsic quality control substance and quality control charts. METHODS: An extrinsic quality control substance was added to the sample, and then, real‐time RT‐PCR was performed. Samples with negative test results and the corresponding data were analyzed; a quality control chart was created and examined. RESULTS: Data analysis and the quality control charts indicated that SARS‐CoV‐2 could be reliably detected using real‐time RT‐PCR, even when different nucleic acid extraction methods were used or when different technicians were employed. CONCLUSION: With the use of quality control substances, it is possible to achieve quality control throughout the process—from nucleic acid extraction to nucleic acid detection—even upon using varying extraction methods. Further, generating quality control charts would guarantee the stable detection of SARS‐CoV‐2.
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spelling pubmed-86051132021-11-24 Establishing an internal quality control method for the stable extraction of nucleic acids of severe acute respiratory syndrome coronavirus 2 and RT‐PCR‐based detection Okuyama, Takahiro Ohtsuka, Kouki Ogura, Wataru Yonetani, Shota Yamasaki, Satoko Miyagi, Hiroyuki Sekiguchi, Kumiko Ohnishi, Hiroaki Watanabe, Takashi J Clin Lab Anal Research Articles BACKGROUND: Severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2), the causative agent of the coronavirus disease 2019 (COVID‐19), is detected using real‐time RT‐PCR. However, there are limitations pertaining to quality control, particularly with respect to establishing quality control measures for extraction of viral nucleic acids. Here, we investigated the quality control measures for the various processes using an extrinsic quality control substance and quality control charts. METHODS: An extrinsic quality control substance was added to the sample, and then, real‐time RT‐PCR was performed. Samples with negative test results and the corresponding data were analyzed; a quality control chart was created and examined. RESULTS: Data analysis and the quality control charts indicated that SARS‐CoV‐2 could be reliably detected using real‐time RT‐PCR, even when different nucleic acid extraction methods were used or when different technicians were employed. CONCLUSION: With the use of quality control substances, it is possible to achieve quality control throughout the process—from nucleic acid extraction to nucleic acid detection—even upon using varying extraction methods. Further, generating quality control charts would guarantee the stable detection of SARS‐CoV‐2. John Wiley and Sons Inc. 2021-10-02 /pmc/articles/PMC8605113/ /pubmed/34599840 http://dx.doi.org/10.1002/jcla.23998 Text en © 2021 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Okuyama, Takahiro
Ohtsuka, Kouki
Ogura, Wataru
Yonetani, Shota
Yamasaki, Satoko
Miyagi, Hiroyuki
Sekiguchi, Kumiko
Ohnishi, Hiroaki
Watanabe, Takashi
Establishing an internal quality control method for the stable extraction of nucleic acids of severe acute respiratory syndrome coronavirus 2 and RT‐PCR‐based detection
title Establishing an internal quality control method for the stable extraction of nucleic acids of severe acute respiratory syndrome coronavirus 2 and RT‐PCR‐based detection
title_full Establishing an internal quality control method for the stable extraction of nucleic acids of severe acute respiratory syndrome coronavirus 2 and RT‐PCR‐based detection
title_fullStr Establishing an internal quality control method for the stable extraction of nucleic acids of severe acute respiratory syndrome coronavirus 2 and RT‐PCR‐based detection
title_full_unstemmed Establishing an internal quality control method for the stable extraction of nucleic acids of severe acute respiratory syndrome coronavirus 2 and RT‐PCR‐based detection
title_short Establishing an internal quality control method for the stable extraction of nucleic acids of severe acute respiratory syndrome coronavirus 2 and RT‐PCR‐based detection
title_sort establishing an internal quality control method for the stable extraction of nucleic acids of severe acute respiratory syndrome coronavirus 2 and rt‐pcr‐based detection
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8605113/
https://www.ncbi.nlm.nih.gov/pubmed/34599840
http://dx.doi.org/10.1002/jcla.23998
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