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Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma
BACKGROUND: Lung adenocarcinoma (LUAD) is the leading cause of cancer‐related deaths worldwide. Therefore, the identification of a novel prediction signature for predicting the prognosis risk and survival outcomes is urgently demanded. METHODS: We integrated a machine‐learning frame by combing the C...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8605161/ https://www.ncbi.nlm.nih.gov/pubmed/34550610 http://dx.doi.org/10.1002/jcla.24018 |
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author | Chen, Yan Zhang, Xiuxiu Li, Jinze Zhou, Min |
author_facet | Chen, Yan Zhang, Xiuxiu Li, Jinze Zhou, Min |
author_sort | Chen, Yan |
collection | PubMed |
description | BACKGROUND: Lung adenocarcinoma (LUAD) is the leading cause of cancer‐related deaths worldwide. Therefore, the identification of a novel prediction signature for predicting the prognosis risk and survival outcomes is urgently demanded. METHODS: We integrated a machine‐learning frame by combing the Cox regression and Least Absolute Shrinkage and Selection Operator (LASSO) regression model to identify the LUAD‐related long non‐coding RNA (lncRNA) survival biomarkers. Subsequently, the Spearman correlation test was employed to interrogate the relationships between lncRNA signature and tumor immunity and constructed the competing endogenous RNA (ceRNA) network. RESULTS: Herein, we identified an eight‐lncRNA signature (PR‐lncRNA signature, NPSR1‐AS1, SATB2‐AS1, LINC01090, FGF12‐AS2, AC005256.1, MAFA‐AS1, BFSP2‐AS1, and CPC5‐AS1), which contributes to predicting LUAD patient's prognosis risk and survival outcomes. The PR‐lncRNA signature has also been confirmed as the robust signature in independent datasets. Further parsing of the LUAD tumor immune infiltration showed the PR‐lncRNAs were closely associated with the abundance of multiple immune cells infiltration and the expression of MHC molecules. Furthermore, by constructing the PR‐lncRNA–related ceRNA network, we interrogated more potential anti‐cancer therapy targets. CONCLUSION: lncRNAs, as emerging cancer biomarkers, play an important role in a variety of cancer processes. Identification of PR‐lncRNA signatures allows us to better predict patient's survival outcomes and disease risk. Finally, the PR‐lncRNA signatures could help us to develop novel LUAD anti‐cancer therapeutic strategies. |
format | Online Article Text |
id | pubmed-8605161 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86051612021-11-24 Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma Chen, Yan Zhang, Xiuxiu Li, Jinze Zhou, Min J Clin Lab Anal Research Articles BACKGROUND: Lung adenocarcinoma (LUAD) is the leading cause of cancer‐related deaths worldwide. Therefore, the identification of a novel prediction signature for predicting the prognosis risk and survival outcomes is urgently demanded. METHODS: We integrated a machine‐learning frame by combing the Cox regression and Least Absolute Shrinkage and Selection Operator (LASSO) regression model to identify the LUAD‐related long non‐coding RNA (lncRNA) survival biomarkers. Subsequently, the Spearman correlation test was employed to interrogate the relationships between lncRNA signature and tumor immunity and constructed the competing endogenous RNA (ceRNA) network. RESULTS: Herein, we identified an eight‐lncRNA signature (PR‐lncRNA signature, NPSR1‐AS1, SATB2‐AS1, LINC01090, FGF12‐AS2, AC005256.1, MAFA‐AS1, BFSP2‐AS1, and CPC5‐AS1), which contributes to predicting LUAD patient's prognosis risk and survival outcomes. The PR‐lncRNA signature has also been confirmed as the robust signature in independent datasets. Further parsing of the LUAD tumor immune infiltration showed the PR‐lncRNAs were closely associated with the abundance of multiple immune cells infiltration and the expression of MHC molecules. Furthermore, by constructing the PR‐lncRNA–related ceRNA network, we interrogated more potential anti‐cancer therapy targets. CONCLUSION: lncRNAs, as emerging cancer biomarkers, play an important role in a variety of cancer processes. Identification of PR‐lncRNA signatures allows us to better predict patient's survival outcomes and disease risk. Finally, the PR‐lncRNA signatures could help us to develop novel LUAD anti‐cancer therapeutic strategies. John Wiley and Sons Inc. 2021-09-22 /pmc/articles/PMC8605161/ /pubmed/34550610 http://dx.doi.org/10.1002/jcla.24018 Text en © 2021 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Chen, Yan Zhang, Xiuxiu Li, Jinze Zhou, Min Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma |
title | Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma |
title_full | Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma |
title_fullStr | Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma |
title_full_unstemmed | Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma |
title_short | Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma |
title_sort | immune‐related eight‐lncrna signature for improving prognosis prediction of lung adenocarcinoma |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8605161/ https://www.ncbi.nlm.nih.gov/pubmed/34550610 http://dx.doi.org/10.1002/jcla.24018 |
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