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Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma

BACKGROUND: Lung adenocarcinoma (LUAD) is the leading cause of cancer‐related deaths worldwide. Therefore, the identification of a novel prediction signature for predicting the prognosis risk and survival outcomes is urgently demanded. METHODS: We integrated a machine‐learning frame by combing the C...

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Detalles Bibliográficos
Autores principales: Chen, Yan, Zhang, Xiuxiu, Li, Jinze, Zhou, Min
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8605161/
https://www.ncbi.nlm.nih.gov/pubmed/34550610
http://dx.doi.org/10.1002/jcla.24018
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author Chen, Yan
Zhang, Xiuxiu
Li, Jinze
Zhou, Min
author_facet Chen, Yan
Zhang, Xiuxiu
Li, Jinze
Zhou, Min
author_sort Chen, Yan
collection PubMed
description BACKGROUND: Lung adenocarcinoma (LUAD) is the leading cause of cancer‐related deaths worldwide. Therefore, the identification of a novel prediction signature for predicting the prognosis risk and survival outcomes is urgently demanded. METHODS: We integrated a machine‐learning frame by combing the Cox regression and Least Absolute Shrinkage and Selection Operator (LASSO) regression model to identify the LUAD‐related long non‐coding RNA (lncRNA) survival biomarkers. Subsequently, the Spearman correlation test was employed to interrogate the relationships between lncRNA signature and tumor immunity and constructed the competing endogenous RNA (ceRNA) network. RESULTS: Herein, we identified an eight‐lncRNA signature (PR‐lncRNA signature, NPSR1‐AS1, SATB2‐AS1, LINC01090, FGF12‐AS2, AC005256.1, MAFA‐AS1, BFSP2‐AS1, and CPC5‐AS1), which contributes to predicting LUAD patient's prognosis risk and survival outcomes. The PR‐lncRNA signature has also been confirmed as the robust signature in independent datasets. Further parsing of the LUAD tumor immune infiltration showed the PR‐lncRNAs were closely associated with the abundance of multiple immune cells infiltration and the expression of MHC molecules. Furthermore, by constructing the PR‐lncRNA–related ceRNA network, we interrogated more potential anti‐cancer therapy targets. CONCLUSION: lncRNAs, as emerging cancer biomarkers, play an important role in a variety of cancer processes. Identification of PR‐lncRNA signatures allows us to better predict patient's survival outcomes and disease risk. Finally, the PR‐lncRNA signatures could help us to develop novel LUAD anti‐cancer therapeutic strategies.
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spelling pubmed-86051612021-11-24 Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma Chen, Yan Zhang, Xiuxiu Li, Jinze Zhou, Min J Clin Lab Anal Research Articles BACKGROUND: Lung adenocarcinoma (LUAD) is the leading cause of cancer‐related deaths worldwide. Therefore, the identification of a novel prediction signature for predicting the prognosis risk and survival outcomes is urgently demanded. METHODS: We integrated a machine‐learning frame by combing the Cox regression and Least Absolute Shrinkage and Selection Operator (LASSO) regression model to identify the LUAD‐related long non‐coding RNA (lncRNA) survival biomarkers. Subsequently, the Spearman correlation test was employed to interrogate the relationships between lncRNA signature and tumor immunity and constructed the competing endogenous RNA (ceRNA) network. RESULTS: Herein, we identified an eight‐lncRNA signature (PR‐lncRNA signature, NPSR1‐AS1, SATB2‐AS1, LINC01090, FGF12‐AS2, AC005256.1, MAFA‐AS1, BFSP2‐AS1, and CPC5‐AS1), which contributes to predicting LUAD patient's prognosis risk and survival outcomes. The PR‐lncRNA signature has also been confirmed as the robust signature in independent datasets. Further parsing of the LUAD tumor immune infiltration showed the PR‐lncRNAs were closely associated with the abundance of multiple immune cells infiltration and the expression of MHC molecules. Furthermore, by constructing the PR‐lncRNA–related ceRNA network, we interrogated more potential anti‐cancer therapy targets. CONCLUSION: lncRNAs, as emerging cancer biomarkers, play an important role in a variety of cancer processes. Identification of PR‐lncRNA signatures allows us to better predict patient's survival outcomes and disease risk. Finally, the PR‐lncRNA signatures could help us to develop novel LUAD anti‐cancer therapeutic strategies. John Wiley and Sons Inc. 2021-09-22 /pmc/articles/PMC8605161/ /pubmed/34550610 http://dx.doi.org/10.1002/jcla.24018 Text en © 2021 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Chen, Yan
Zhang, Xiuxiu
Li, Jinze
Zhou, Min
Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma
title Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma
title_full Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma
title_fullStr Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma
title_full_unstemmed Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma
title_short Immune‐related eight‐lncRNA signature for improving prognosis prediction of lung adenocarcinoma
title_sort immune‐related eight‐lncrna signature for improving prognosis prediction of lung adenocarcinoma
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8605161/
https://www.ncbi.nlm.nih.gov/pubmed/34550610
http://dx.doi.org/10.1002/jcla.24018
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