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Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients

BACKGROUND: Ovarian cancer (OV) is deemed the most lethal gynecological cancer in women. The aim of this study was to construct an effective gene prognostic model for predicting overall survival (OS) in patients with OV. METHODS: The expression profiles of glycolysis‐related genes (GRGs) and clinica...

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Autores principales: Zhang, Dai, Li, Yiche, Yang, Si, Wang, Meng, Yao, Jia, Zheng, Yi, Deng, Yujiao, Li, Na, Wei, Bajin, Wu, Ying, Zhai, Zhen, Dai, Zhijun, Kang, Huafeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8607265/
https://www.ncbi.nlm.nih.gov/pubmed/34609082
http://dx.doi.org/10.1002/cam4.4317
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author Zhang, Dai
Li, Yiche
Yang, Si
Wang, Meng
Yao, Jia
Zheng, Yi
Deng, Yujiao
Li, Na
Wei, Bajin
Wu, Ying
Zhai, Zhen
Dai, Zhijun
Kang, Huafeng
author_facet Zhang, Dai
Li, Yiche
Yang, Si
Wang, Meng
Yao, Jia
Zheng, Yi
Deng, Yujiao
Li, Na
Wei, Bajin
Wu, Ying
Zhai, Zhen
Dai, Zhijun
Kang, Huafeng
author_sort Zhang, Dai
collection PubMed
description BACKGROUND: Ovarian cancer (OV) is deemed the most lethal gynecological cancer in women. The aim of this study was to construct an effective gene prognostic model for predicting overall survival (OS) in patients with OV. METHODS: The expression profiles of glycolysis‐related genes (GRGs) and clinical data of patients with OV were extracted from The Cancer Genome Atlas (TCGA) database. Univariate, multivariate, and least absolute shrinkage and selection operator Cox regression analyses were conducted, and a prognostic signature based on GRGs was constructed. The predictive ability of the signature was analyzed using training and test sets. RESULTS: A gene risk signature based on nine GRGs (ISG20, CITED2, PYGB, IRS2, ANGPTL4, TGFBI, LHX9, PC, and DDIT4) was identified to predict the survival outcome of patients with OV. The signature showed a good prognostic ability for OV, particularly high‐grade OV, in the TCGA dataset, with areas under the curve (AUC) of 0.709 and 0.762 for 3‐ and 5‐year survival, respectively. Similar results were found in the test sets, and the AUCs of 3‐, 5‐year OS were 0.714 and 0.772 in the combined test set. And our signature was an independent prognostic factor. Moreover, a nomogram combining the prediction model and clinical factors was developed. CONCLUSION: Our study established a nine‐GRG risk model and nomogram to better predict OS in patients with OV. The risk model represents a promising and independent prognostic predictor for patients with OV. Moreover, our study on GRGs could offer guidance for the elucidation of underlying mechanisms in future studies.
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spelling pubmed-86072652021-11-29 Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients Zhang, Dai Li, Yiche Yang, Si Wang, Meng Yao, Jia Zheng, Yi Deng, Yujiao Li, Na Wei, Bajin Wu, Ying Zhai, Zhen Dai, Zhijun Kang, Huafeng Cancer Med Bioinfomatics BACKGROUND: Ovarian cancer (OV) is deemed the most lethal gynecological cancer in women. The aim of this study was to construct an effective gene prognostic model for predicting overall survival (OS) in patients with OV. METHODS: The expression profiles of glycolysis‐related genes (GRGs) and clinical data of patients with OV were extracted from The Cancer Genome Atlas (TCGA) database. Univariate, multivariate, and least absolute shrinkage and selection operator Cox regression analyses were conducted, and a prognostic signature based on GRGs was constructed. The predictive ability of the signature was analyzed using training and test sets. RESULTS: A gene risk signature based on nine GRGs (ISG20, CITED2, PYGB, IRS2, ANGPTL4, TGFBI, LHX9, PC, and DDIT4) was identified to predict the survival outcome of patients with OV. The signature showed a good prognostic ability for OV, particularly high‐grade OV, in the TCGA dataset, with areas under the curve (AUC) of 0.709 and 0.762 for 3‐ and 5‐year survival, respectively. Similar results were found in the test sets, and the AUCs of 3‐, 5‐year OS were 0.714 and 0.772 in the combined test set. And our signature was an independent prognostic factor. Moreover, a nomogram combining the prediction model and clinical factors was developed. CONCLUSION: Our study established a nine‐GRG risk model and nomogram to better predict OS in patients with OV. The risk model represents a promising and independent prognostic predictor for patients with OV. Moreover, our study on GRGs could offer guidance for the elucidation of underlying mechanisms in future studies. John Wiley and Sons Inc. 2021-10-05 /pmc/articles/PMC8607265/ /pubmed/34609082 http://dx.doi.org/10.1002/cam4.4317 Text en © 2021 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Bioinfomatics
Zhang, Dai
Li, Yiche
Yang, Si
Wang, Meng
Yao, Jia
Zheng, Yi
Deng, Yujiao
Li, Na
Wei, Bajin
Wu, Ying
Zhai, Zhen
Dai, Zhijun
Kang, Huafeng
Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients
title Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients
title_full Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients
title_fullStr Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients
title_full_unstemmed Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients
title_short Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients
title_sort identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients
topic Bioinfomatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8607265/
https://www.ncbi.nlm.nih.gov/pubmed/34609082
http://dx.doi.org/10.1002/cam4.4317
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