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Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients
BACKGROUND: Ovarian cancer (OV) is deemed the most lethal gynecological cancer in women. The aim of this study was to construct an effective gene prognostic model for predicting overall survival (OS) in patients with OV. METHODS: The expression profiles of glycolysis‐related genes (GRGs) and clinica...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8607265/ https://www.ncbi.nlm.nih.gov/pubmed/34609082 http://dx.doi.org/10.1002/cam4.4317 |
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author | Zhang, Dai Li, Yiche Yang, Si Wang, Meng Yao, Jia Zheng, Yi Deng, Yujiao Li, Na Wei, Bajin Wu, Ying Zhai, Zhen Dai, Zhijun Kang, Huafeng |
author_facet | Zhang, Dai Li, Yiche Yang, Si Wang, Meng Yao, Jia Zheng, Yi Deng, Yujiao Li, Na Wei, Bajin Wu, Ying Zhai, Zhen Dai, Zhijun Kang, Huafeng |
author_sort | Zhang, Dai |
collection | PubMed |
description | BACKGROUND: Ovarian cancer (OV) is deemed the most lethal gynecological cancer in women. The aim of this study was to construct an effective gene prognostic model for predicting overall survival (OS) in patients with OV. METHODS: The expression profiles of glycolysis‐related genes (GRGs) and clinical data of patients with OV were extracted from The Cancer Genome Atlas (TCGA) database. Univariate, multivariate, and least absolute shrinkage and selection operator Cox regression analyses were conducted, and a prognostic signature based on GRGs was constructed. The predictive ability of the signature was analyzed using training and test sets. RESULTS: A gene risk signature based on nine GRGs (ISG20, CITED2, PYGB, IRS2, ANGPTL4, TGFBI, LHX9, PC, and DDIT4) was identified to predict the survival outcome of patients with OV. The signature showed a good prognostic ability for OV, particularly high‐grade OV, in the TCGA dataset, with areas under the curve (AUC) of 0.709 and 0.762 for 3‐ and 5‐year survival, respectively. Similar results were found in the test sets, and the AUCs of 3‐, 5‐year OS were 0.714 and 0.772 in the combined test set. And our signature was an independent prognostic factor. Moreover, a nomogram combining the prediction model and clinical factors was developed. CONCLUSION: Our study established a nine‐GRG risk model and nomogram to better predict OS in patients with OV. The risk model represents a promising and independent prognostic predictor for patients with OV. Moreover, our study on GRGs could offer guidance for the elucidation of underlying mechanisms in future studies. |
format | Online Article Text |
id | pubmed-8607265 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86072652021-11-29 Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients Zhang, Dai Li, Yiche Yang, Si Wang, Meng Yao, Jia Zheng, Yi Deng, Yujiao Li, Na Wei, Bajin Wu, Ying Zhai, Zhen Dai, Zhijun Kang, Huafeng Cancer Med Bioinfomatics BACKGROUND: Ovarian cancer (OV) is deemed the most lethal gynecological cancer in women. The aim of this study was to construct an effective gene prognostic model for predicting overall survival (OS) in patients with OV. METHODS: The expression profiles of glycolysis‐related genes (GRGs) and clinical data of patients with OV were extracted from The Cancer Genome Atlas (TCGA) database. Univariate, multivariate, and least absolute shrinkage and selection operator Cox regression analyses were conducted, and a prognostic signature based on GRGs was constructed. The predictive ability of the signature was analyzed using training and test sets. RESULTS: A gene risk signature based on nine GRGs (ISG20, CITED2, PYGB, IRS2, ANGPTL4, TGFBI, LHX9, PC, and DDIT4) was identified to predict the survival outcome of patients with OV. The signature showed a good prognostic ability for OV, particularly high‐grade OV, in the TCGA dataset, with areas under the curve (AUC) of 0.709 and 0.762 for 3‐ and 5‐year survival, respectively. Similar results were found in the test sets, and the AUCs of 3‐, 5‐year OS were 0.714 and 0.772 in the combined test set. And our signature was an independent prognostic factor. Moreover, a nomogram combining the prediction model and clinical factors was developed. CONCLUSION: Our study established a nine‐GRG risk model and nomogram to better predict OS in patients with OV. The risk model represents a promising and independent prognostic predictor for patients with OV. Moreover, our study on GRGs could offer guidance for the elucidation of underlying mechanisms in future studies. John Wiley and Sons Inc. 2021-10-05 /pmc/articles/PMC8607265/ /pubmed/34609082 http://dx.doi.org/10.1002/cam4.4317 Text en © 2021 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Bioinfomatics Zhang, Dai Li, Yiche Yang, Si Wang, Meng Yao, Jia Zheng, Yi Deng, Yujiao Li, Na Wei, Bajin Wu, Ying Zhai, Zhen Dai, Zhijun Kang, Huafeng Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients |
title | Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients |
title_full | Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients |
title_fullStr | Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients |
title_full_unstemmed | Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients |
title_short | Identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients |
title_sort | identification of a glycolysis‐related gene signature for survival prediction of ovarian cancer patients |
topic | Bioinfomatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8607265/ https://www.ncbi.nlm.nih.gov/pubmed/34609082 http://dx.doi.org/10.1002/cam4.4317 |
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