Cargando…

Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma

Background: Gastric carcinoma (GC) is a molecularly and phenotypically highly heterogeneous disease, making the prognostic prediction challenging. On the other hand, Inflammation as part of the active cross-talk between the tumor and the host in the tumor or its microenvironment could affect prognos...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, ShuQiao, Li, XinYu, Tang, ChunZhi, Kuang, WeiHong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8607501/
https://www.ncbi.nlm.nih.gov/pubmed/34819945
http://dx.doi.org/10.3389/fgene.2021.736766
_version_ 1784602576792059904
author Zhang, ShuQiao
Li, XinYu
Tang, ChunZhi
Kuang, WeiHong
author_facet Zhang, ShuQiao
Li, XinYu
Tang, ChunZhi
Kuang, WeiHong
author_sort Zhang, ShuQiao
collection PubMed
description Background: Gastric carcinoma (GC) is a molecularly and phenotypically highly heterogeneous disease, making the prognostic prediction challenging. On the other hand, Inflammation as part of the active cross-talk between the tumor and the host in the tumor or its microenvironment could affect prognosis. Method: We established a prognostic multi lncRNAs signature that could better predict the prognosis of GC patients based on inflammation-related differentially expressed lncRNAs in GC. Results: We identified 10 differently expressed lncRNAs related to inflammation associated with GC prognosis. Kaplan-Meier survival analysis demonstrated that high-risk inflammation-related lncRNAs signature was related to poor prognosis of GC. Moreover, the inflammation-related lncRNAs signature had an AUC of 0.788, proving their utility in predicting GC prognosis. Indeed, our risk signature is more precise in predicting the prognosis of GC patients than traditional clinicopathological manifestations. Immune and tumor-related pathways for individuals in the low and high-risk groups were further revealed by GSEA. Moreover, TCGA based analysis revealed significant differences in HLA, MHC class-I, cytolytic activity, parainflammation, co-stimulation of APC, type II INF response, and type I INF response between the two risk groups. Immune checkpoints revealed CD86, TNFSF18, CD200, and LAIR1 were differently expressed between lowand high-risk groups. Conclusion: A novel inflammation-related lncRNAs (AC015660.1, LINC01094, AL512506.1, AC124067.2, AC016737.1, AL136115.1, AP000695.1, AC104695.3, LINC00449, AC090772.1) signature may provide insight into the new therapies and prognosis prediction for GC patients.
format Online
Article
Text
id pubmed-8607501
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-86075012021-11-23 Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma Zhang, ShuQiao Li, XinYu Tang, ChunZhi Kuang, WeiHong Front Genet Genetics Background: Gastric carcinoma (GC) is a molecularly and phenotypically highly heterogeneous disease, making the prognostic prediction challenging. On the other hand, Inflammation as part of the active cross-talk between the tumor and the host in the tumor or its microenvironment could affect prognosis. Method: We established a prognostic multi lncRNAs signature that could better predict the prognosis of GC patients based on inflammation-related differentially expressed lncRNAs in GC. Results: We identified 10 differently expressed lncRNAs related to inflammation associated with GC prognosis. Kaplan-Meier survival analysis demonstrated that high-risk inflammation-related lncRNAs signature was related to poor prognosis of GC. Moreover, the inflammation-related lncRNAs signature had an AUC of 0.788, proving their utility in predicting GC prognosis. Indeed, our risk signature is more precise in predicting the prognosis of GC patients than traditional clinicopathological manifestations. Immune and tumor-related pathways for individuals in the low and high-risk groups were further revealed by GSEA. Moreover, TCGA based analysis revealed significant differences in HLA, MHC class-I, cytolytic activity, parainflammation, co-stimulation of APC, type II INF response, and type I INF response between the two risk groups. Immune checkpoints revealed CD86, TNFSF18, CD200, and LAIR1 were differently expressed between lowand high-risk groups. Conclusion: A novel inflammation-related lncRNAs (AC015660.1, LINC01094, AL512506.1, AC124067.2, AC016737.1, AL136115.1, AP000695.1, AC104695.3, LINC00449, AC090772.1) signature may provide insight into the new therapies and prognosis prediction for GC patients. Frontiers Media S.A. 2021-11-08 /pmc/articles/PMC8607501/ /pubmed/34819945 http://dx.doi.org/10.3389/fgene.2021.736766 Text en Copyright © 2021 Zhang, Li, Tang and Kuang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Zhang, ShuQiao
Li, XinYu
Tang, ChunZhi
Kuang, WeiHong
Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma
title Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma
title_full Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma
title_fullStr Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma
title_full_unstemmed Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma
title_short Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma
title_sort inflammation-related long non-coding rna signature predicts the prognosis of gastric carcinoma
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8607501/
https://www.ncbi.nlm.nih.gov/pubmed/34819945
http://dx.doi.org/10.3389/fgene.2021.736766
work_keys_str_mv AT zhangshuqiao inflammationrelatedlongnoncodingrnasignaturepredictstheprognosisofgastriccarcinoma
AT lixinyu inflammationrelatedlongnoncodingrnasignaturepredictstheprognosisofgastriccarcinoma
AT tangchunzhi inflammationrelatedlongnoncodingrnasignaturepredictstheprognosisofgastriccarcinoma
AT kuangweihong inflammationrelatedlongnoncodingrnasignaturepredictstheprognosisofgastriccarcinoma