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Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma
Background: Gastric carcinoma (GC) is a molecularly and phenotypically highly heterogeneous disease, making the prognostic prediction challenging. On the other hand, Inflammation as part of the active cross-talk between the tumor and the host in the tumor or its microenvironment could affect prognos...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8607501/ https://www.ncbi.nlm.nih.gov/pubmed/34819945 http://dx.doi.org/10.3389/fgene.2021.736766 |
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author | Zhang, ShuQiao Li, XinYu Tang, ChunZhi Kuang, WeiHong |
author_facet | Zhang, ShuQiao Li, XinYu Tang, ChunZhi Kuang, WeiHong |
author_sort | Zhang, ShuQiao |
collection | PubMed |
description | Background: Gastric carcinoma (GC) is a molecularly and phenotypically highly heterogeneous disease, making the prognostic prediction challenging. On the other hand, Inflammation as part of the active cross-talk between the tumor and the host in the tumor or its microenvironment could affect prognosis. Method: We established a prognostic multi lncRNAs signature that could better predict the prognosis of GC patients based on inflammation-related differentially expressed lncRNAs in GC. Results: We identified 10 differently expressed lncRNAs related to inflammation associated with GC prognosis. Kaplan-Meier survival analysis demonstrated that high-risk inflammation-related lncRNAs signature was related to poor prognosis of GC. Moreover, the inflammation-related lncRNAs signature had an AUC of 0.788, proving their utility in predicting GC prognosis. Indeed, our risk signature is more precise in predicting the prognosis of GC patients than traditional clinicopathological manifestations. Immune and tumor-related pathways for individuals in the low and high-risk groups were further revealed by GSEA. Moreover, TCGA based analysis revealed significant differences in HLA, MHC class-I, cytolytic activity, parainflammation, co-stimulation of APC, type II INF response, and type I INF response between the two risk groups. Immune checkpoints revealed CD86, TNFSF18, CD200, and LAIR1 were differently expressed between lowand high-risk groups. Conclusion: A novel inflammation-related lncRNAs (AC015660.1, LINC01094, AL512506.1, AC124067.2, AC016737.1, AL136115.1, AP000695.1, AC104695.3, LINC00449, AC090772.1) signature may provide insight into the new therapies and prognosis prediction for GC patients. |
format | Online Article Text |
id | pubmed-8607501 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86075012021-11-23 Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma Zhang, ShuQiao Li, XinYu Tang, ChunZhi Kuang, WeiHong Front Genet Genetics Background: Gastric carcinoma (GC) is a molecularly and phenotypically highly heterogeneous disease, making the prognostic prediction challenging. On the other hand, Inflammation as part of the active cross-talk between the tumor and the host in the tumor or its microenvironment could affect prognosis. Method: We established a prognostic multi lncRNAs signature that could better predict the prognosis of GC patients based on inflammation-related differentially expressed lncRNAs in GC. Results: We identified 10 differently expressed lncRNAs related to inflammation associated with GC prognosis. Kaplan-Meier survival analysis demonstrated that high-risk inflammation-related lncRNAs signature was related to poor prognosis of GC. Moreover, the inflammation-related lncRNAs signature had an AUC of 0.788, proving their utility in predicting GC prognosis. Indeed, our risk signature is more precise in predicting the prognosis of GC patients than traditional clinicopathological manifestations. Immune and tumor-related pathways for individuals in the low and high-risk groups were further revealed by GSEA. Moreover, TCGA based analysis revealed significant differences in HLA, MHC class-I, cytolytic activity, parainflammation, co-stimulation of APC, type II INF response, and type I INF response between the two risk groups. Immune checkpoints revealed CD86, TNFSF18, CD200, and LAIR1 were differently expressed between lowand high-risk groups. Conclusion: A novel inflammation-related lncRNAs (AC015660.1, LINC01094, AL512506.1, AC124067.2, AC016737.1, AL136115.1, AP000695.1, AC104695.3, LINC00449, AC090772.1) signature may provide insight into the new therapies and prognosis prediction for GC patients. Frontiers Media S.A. 2021-11-08 /pmc/articles/PMC8607501/ /pubmed/34819945 http://dx.doi.org/10.3389/fgene.2021.736766 Text en Copyright © 2021 Zhang, Li, Tang and Kuang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Zhang, ShuQiao Li, XinYu Tang, ChunZhi Kuang, WeiHong Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma |
title | Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma |
title_full | Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma |
title_fullStr | Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma |
title_full_unstemmed | Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma |
title_short | Inflammation-Related Long Non-Coding RNA Signature Predicts the Prognosis of Gastric Carcinoma |
title_sort | inflammation-related long non-coding rna signature predicts the prognosis of gastric carcinoma |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8607501/ https://www.ncbi.nlm.nih.gov/pubmed/34819945 http://dx.doi.org/10.3389/fgene.2021.736766 |
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