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Behaviours of antiviral Oseltamivir in different media: DFT and SQMFF calculations
The synthetic cyclohexenecarboxylate ester antiviral Oseltamivir (O) have been theoretically studied by B3LYP/6–311 + + G** calculations to estimate its reactivity and behaviour in gas and aqueous media. The most stable structure obtained in above media is consistent with that reported experimental...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8608578/ https://www.ncbi.nlm.nih.gov/pubmed/34812947 http://dx.doi.org/10.1007/s00894-021-04962-3 |
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author | Vakili, Mohammad Romano, Elida Darugar, Vahidreza Brandán, Silvia Antonia |
author_facet | Vakili, Mohammad Romano, Elida Darugar, Vahidreza Brandán, Silvia Antonia |
author_sort | Vakili, Mohammad |
collection | PubMed |
description | The synthetic cyclohexenecarboxylate ester antiviral Oseltamivir (O) have been theoretically studied by B3LYP/6–311 + + G** calculations to estimate its reactivity and behaviour in gas and aqueous media. The most stable structure obtained in above media is consistent with that reported experimental for Oseltamivir phosphate. The solvation energy value of (O) in aqueous media is between the predicted for antiviral Idoxuridine and Ribavirin. Besides, (O) containing a NH(2) group and NH group reveals lower solvation energy compared with other antiviral agents with an NH(2) group, such as Ribavirin, Cidofovir, and Brincidofovir. Atomic charges on N and O atoms in acceptors and donor groups reveal different behaviours in both media, while the natural bond orbital (NBO) studies show a raised stability of (O) in aqueous solution. This latter resulted is in concordance with the lower reactivity evidenced in water. Frontier orbital studies have revealed that (O) in gas phase has a very similar gap value to antiviral Cidofovir used against the ebola disease, while Chloroquine in the two media are more reactive than (O). This study will allow to identify (O) by using vibrational spectroscopy because the 144 vibration modes expected have been assigned using the harmonic force fields calculated from the scaled mechanical force field methodology (SQMFF). Scaled force constants for (O) in the mentioned media are also reported for first time. Due to hydration of the C = O and NH(2) groups by solvent molecules, the calculations in solution produce variations not only in the IR wavenumbers bands, but also in their intensities. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00894-021-04962-3. |
format | Online Article Text |
id | pubmed-8608578 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-86085782021-11-23 Behaviours of antiviral Oseltamivir in different media: DFT and SQMFF calculations Vakili, Mohammad Romano, Elida Darugar, Vahidreza Brandán, Silvia Antonia J Mol Model Original Paper The synthetic cyclohexenecarboxylate ester antiviral Oseltamivir (O) have been theoretically studied by B3LYP/6–311 + + G** calculations to estimate its reactivity and behaviour in gas and aqueous media. The most stable structure obtained in above media is consistent with that reported experimental for Oseltamivir phosphate. The solvation energy value of (O) in aqueous media is between the predicted for antiviral Idoxuridine and Ribavirin. Besides, (O) containing a NH(2) group and NH group reveals lower solvation energy compared with other antiviral agents with an NH(2) group, such as Ribavirin, Cidofovir, and Brincidofovir. Atomic charges on N and O atoms in acceptors and donor groups reveal different behaviours in both media, while the natural bond orbital (NBO) studies show a raised stability of (O) in aqueous solution. This latter resulted is in concordance with the lower reactivity evidenced in water. Frontier orbital studies have revealed that (O) in gas phase has a very similar gap value to antiviral Cidofovir used against the ebola disease, while Chloroquine in the two media are more reactive than (O). This study will allow to identify (O) by using vibrational spectroscopy because the 144 vibration modes expected have been assigned using the harmonic force fields calculated from the scaled mechanical force field methodology (SQMFF). Scaled force constants for (O) in the mentioned media are also reported for first time. Due to hydration of the C = O and NH(2) groups by solvent molecules, the calculations in solution produce variations not only in the IR wavenumbers bands, but also in their intensities. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00894-021-04962-3. Springer Berlin Heidelberg 2021-11-23 2021 /pmc/articles/PMC8608578/ /pubmed/34812947 http://dx.doi.org/10.1007/s00894-021-04962-3 Text en © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Original Paper Vakili, Mohammad Romano, Elida Darugar, Vahidreza Brandán, Silvia Antonia Behaviours of antiviral Oseltamivir in different media: DFT and SQMFF calculations |
title | Behaviours of antiviral Oseltamivir in different media: DFT and SQMFF calculations |
title_full | Behaviours of antiviral Oseltamivir in different media: DFT and SQMFF calculations |
title_fullStr | Behaviours of antiviral Oseltamivir in different media: DFT and SQMFF calculations |
title_full_unstemmed | Behaviours of antiviral Oseltamivir in different media: DFT and SQMFF calculations |
title_short | Behaviours of antiviral Oseltamivir in different media: DFT and SQMFF calculations |
title_sort | behaviours of antiviral oseltamivir in different media: dft and sqmff calculations |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8608578/ https://www.ncbi.nlm.nih.gov/pubmed/34812947 http://dx.doi.org/10.1007/s00894-021-04962-3 |
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