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Activity-based epidemic propagation and contact network scaling in auto-dependent metropolitan areas
We build on recent work to develop a fully mechanistic, activity-based and highly spatio-temporally resolved epidemiological model which leverages person-trajectories obtained from an activity-based model calibrated for two full-scale prototype cities, consisting of representative synthetic populati...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8608855/ https://www.ncbi.nlm.nih.gov/pubmed/34811414 http://dx.doi.org/10.1038/s41598-021-01522-w |
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author | Kumar, Nishant Oke, Jimi Nahmias-Biran, Bat-hen |
author_facet | Kumar, Nishant Oke, Jimi Nahmias-Biran, Bat-hen |
author_sort | Kumar, Nishant |
collection | PubMed |
description | We build on recent work to develop a fully mechanistic, activity-based and highly spatio-temporally resolved epidemiological model which leverages person-trajectories obtained from an activity-based model calibrated for two full-scale prototype cities, consisting of representative synthetic populations and mobility networks for two contrasting auto-dependent city typologies. We simulate the propagation of the COVID-19 epidemic in both cities to analyze spreading patterns in urban networks across various activity types. Investigating the impact of the transit network, we find that its removal dampens disease propagation significantly, suggesting that transit restriction is more critical for mitigating post-peak disease spreading in transit dense cities. In the latter stages of disease spread, we find that the greatest share of infections occur at work locations. A statistical analysis of the resulting activity-based contact networks indicates that transit contacts are scale-free, work contacts are Weibull distributed, and shopping or leisure contacts are exponentially distributed. We validate our simulation results against existing case and mortality data across multiple cities in their respective typologies. Our framework demonstrates the potential for tracking epidemic propagation in urban networks, analyzing socio-demographic impacts and assessing activity- and mobility-specific implications of both non-pharmaceutical and pharmaceutical intervention strategies. |
format | Online Article Text |
id | pubmed-8608855 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-86088552021-11-24 Activity-based epidemic propagation and contact network scaling in auto-dependent metropolitan areas Kumar, Nishant Oke, Jimi Nahmias-Biran, Bat-hen Sci Rep Article We build on recent work to develop a fully mechanistic, activity-based and highly spatio-temporally resolved epidemiological model which leverages person-trajectories obtained from an activity-based model calibrated for two full-scale prototype cities, consisting of representative synthetic populations and mobility networks for two contrasting auto-dependent city typologies. We simulate the propagation of the COVID-19 epidemic in both cities to analyze spreading patterns in urban networks across various activity types. Investigating the impact of the transit network, we find that its removal dampens disease propagation significantly, suggesting that transit restriction is more critical for mitigating post-peak disease spreading in transit dense cities. In the latter stages of disease spread, we find that the greatest share of infections occur at work locations. A statistical analysis of the resulting activity-based contact networks indicates that transit contacts are scale-free, work contacts are Weibull distributed, and shopping or leisure contacts are exponentially distributed. We validate our simulation results against existing case and mortality data across multiple cities in their respective typologies. Our framework demonstrates the potential for tracking epidemic propagation in urban networks, analyzing socio-demographic impacts and assessing activity- and mobility-specific implications of both non-pharmaceutical and pharmaceutical intervention strategies. Nature Publishing Group UK 2021-11-22 /pmc/articles/PMC8608855/ /pubmed/34811414 http://dx.doi.org/10.1038/s41598-021-01522-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Kumar, Nishant Oke, Jimi Nahmias-Biran, Bat-hen Activity-based epidemic propagation and contact network scaling in auto-dependent metropolitan areas |
title | Activity-based epidemic propagation and contact network scaling in auto-dependent metropolitan areas |
title_full | Activity-based epidemic propagation and contact network scaling in auto-dependent metropolitan areas |
title_fullStr | Activity-based epidemic propagation and contact network scaling in auto-dependent metropolitan areas |
title_full_unstemmed | Activity-based epidemic propagation and contact network scaling in auto-dependent metropolitan areas |
title_short | Activity-based epidemic propagation and contact network scaling in auto-dependent metropolitan areas |
title_sort | activity-based epidemic propagation and contact network scaling in auto-dependent metropolitan areas |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8608855/ https://www.ncbi.nlm.nih.gov/pubmed/34811414 http://dx.doi.org/10.1038/s41598-021-01522-w |
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