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Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.

Escherichia coli species exhibits a high genomic diversification from evolution, mobile genetic elements and recombination. An environmental E. coli isolate, ‘JHI_5025’ from a crop trial appeared to be clonally related to the historical reference isolate E. coli K-12 strain ‘MG1655’, warranting furt...

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Autor principal: Holden, Nicola
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8609132/
https://www.ncbi.nlm.nih.gov/pubmed/34849384
http://dx.doi.org/10.1016/j.dib.2021.107586
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author Holden, Nicola
author_facet Holden, Nicola
author_sort Holden, Nicola
collection PubMed
description Escherichia coli species exhibits a high genomic diversification from evolution, mobile genetic elements and recombination. An environmental E. coli isolate, ‘JHI_5025’ from a crop trial appeared to be clonally related to the historical reference isolate E. coli K-12 strain ‘MG1655’, warranting further genomic analysis. Their genomes share an average nucleotide identity of 99.74% and whole genome alignment showed little rearrangement of the JHI_5025 sequence compared to the reference. Five genomic islands not in the reference aligned to other sequences in the Enterobacteriaceae. Isolate JHI_5025 contained E. coli K-12 F plasmid sequence and at least one complete prophage sequence. The genome and comparison dataset provides utility of E. coli JHI_5025 as a representative contemporary genetic mimic of a well-known and much used workhorse strain.
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spelling pubmed-86091322021-11-29 Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655. Holden, Nicola Data Brief Data Article Escherichia coli species exhibits a high genomic diversification from evolution, mobile genetic elements and recombination. An environmental E. coli isolate, ‘JHI_5025’ from a crop trial appeared to be clonally related to the historical reference isolate E. coli K-12 strain ‘MG1655’, warranting further genomic analysis. Their genomes share an average nucleotide identity of 99.74% and whole genome alignment showed little rearrangement of the JHI_5025 sequence compared to the reference. Five genomic islands not in the reference aligned to other sequences in the Enterobacteriaceae. Isolate JHI_5025 contained E. coli K-12 F plasmid sequence and at least one complete prophage sequence. The genome and comparison dataset provides utility of E. coli JHI_5025 as a representative contemporary genetic mimic of a well-known and much used workhorse strain. Elsevier 2021-11-18 /pmc/articles/PMC8609132/ /pubmed/34849384 http://dx.doi.org/10.1016/j.dib.2021.107586 Text en © 2021 The Author. Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Holden, Nicola
Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.
title Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.
title_full Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.
title_fullStr Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.
title_full_unstemmed Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.
title_short Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.
title_sort genomic data of an environmental escherichia coli isolate shows high resemblance to e. coli k-12 reference strain mg1655.
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8609132/
https://www.ncbi.nlm.nih.gov/pubmed/34849384
http://dx.doi.org/10.1016/j.dib.2021.107586
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