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Uncertainty-aware convolutional neural network for COVID-19 X-ray images classification

Deep learning (DL) has shown great success in the field of medical image analysis. In the wake of the current pandemic situation of SARS-CoV-2, a few pioneering works based on DL have made significant progress in automated screening of COVID-19 disease from the chest X-ray (CXR) images. But these DL...

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Autores principales: Gour, Mahesh, Jain, Sweta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8609674/
https://www.ncbi.nlm.nih.gov/pubmed/34847386
http://dx.doi.org/10.1016/j.compbiomed.2021.105047
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author Gour, Mahesh
Jain, Sweta
author_facet Gour, Mahesh
Jain, Sweta
author_sort Gour, Mahesh
collection PubMed
description Deep learning (DL) has shown great success in the field of medical image analysis. In the wake of the current pandemic situation of SARS-CoV-2, a few pioneering works based on DL have made significant progress in automated screening of COVID-19 disease from the chest X-ray (CXR) images. But these DL models have no inherent way of expressing uncertainty associated with the model’s prediction, which is very important in medical image analysis. Therefore, in this paper, we develop an uncertainty-aware convolutional neural network model, named UA-ConvNet, for the automated detection of COVID-19 disease from CXR images, with an estimation of associated uncertainty in the model’s predictions. The proposed approach utilizes the EfficientNet-B3 model and Monte Carlo (MC) dropout, where an EfficientNet-B3 model has been fine-tuned on the CXR images. During inference, MC dropout has been applied for M forward passes to obtain the posterior predictive distribution. After that mean and entropy have been calculated on the obtained predictive distribution to get the mean prediction and model uncertainty. The proposed method is evaluated on the three different datasets of chest X-ray images, namely the COVID19CXr, X-ray image, and Kaggle datasets. The proposed UA-ConvNet model achieves a G-mean of 98.02% (with a Confidence Interval (CI) of 97.99–98.07) and sensitivity of 98.15% for the multi-class classification task on the COVID19CXr dataset. For binary classification, the proposed model achieves a G-mean of 99.16% (with a CI of 98.81–99.19) and a sensitivity of 99.30% on the X-ray Image dataset. Our proposed approach shows its superiority over the existing methods for diagnosing the COVID-19 cases from the CXR images.
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spelling pubmed-86096742021-11-23 Uncertainty-aware convolutional neural network for COVID-19 X-ray images classification Gour, Mahesh Jain, Sweta Comput Biol Med Article Deep learning (DL) has shown great success in the field of medical image analysis. In the wake of the current pandemic situation of SARS-CoV-2, a few pioneering works based on DL have made significant progress in automated screening of COVID-19 disease from the chest X-ray (CXR) images. But these DL models have no inherent way of expressing uncertainty associated with the model’s prediction, which is very important in medical image analysis. Therefore, in this paper, we develop an uncertainty-aware convolutional neural network model, named UA-ConvNet, for the automated detection of COVID-19 disease from CXR images, with an estimation of associated uncertainty in the model’s predictions. The proposed approach utilizes the EfficientNet-B3 model and Monte Carlo (MC) dropout, where an EfficientNet-B3 model has been fine-tuned on the CXR images. During inference, MC dropout has been applied for M forward passes to obtain the posterior predictive distribution. After that mean and entropy have been calculated on the obtained predictive distribution to get the mean prediction and model uncertainty. The proposed method is evaluated on the three different datasets of chest X-ray images, namely the COVID19CXr, X-ray image, and Kaggle datasets. The proposed UA-ConvNet model achieves a G-mean of 98.02% (with a Confidence Interval (CI) of 97.99–98.07) and sensitivity of 98.15% for the multi-class classification task on the COVID19CXr dataset. For binary classification, the proposed model achieves a G-mean of 99.16% (with a CI of 98.81–99.19) and a sensitivity of 99.30% on the X-ray Image dataset. Our proposed approach shows its superiority over the existing methods for diagnosing the COVID-19 cases from the CXR images. Elsevier Ltd. 2022-01 2021-11-23 /pmc/articles/PMC8609674/ /pubmed/34847386 http://dx.doi.org/10.1016/j.compbiomed.2021.105047 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Gour, Mahesh
Jain, Sweta
Uncertainty-aware convolutional neural network for COVID-19 X-ray images classification
title Uncertainty-aware convolutional neural network for COVID-19 X-ray images classification
title_full Uncertainty-aware convolutional neural network for COVID-19 X-ray images classification
title_fullStr Uncertainty-aware convolutional neural network for COVID-19 X-ray images classification
title_full_unstemmed Uncertainty-aware convolutional neural network for COVID-19 X-ray images classification
title_short Uncertainty-aware convolutional neural network for COVID-19 X-ray images classification
title_sort uncertainty-aware convolutional neural network for covid-19 x-ray images classification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8609674/
https://www.ncbi.nlm.nih.gov/pubmed/34847386
http://dx.doi.org/10.1016/j.compbiomed.2021.105047
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